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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctttcatggtagtcagtactcagtaggaagaaagtctttgcttgttttttctttctatgatatctttcatgttttcaccatgaatccaattttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCACCTGAACTCATATTTGGGGCCACAGAGTATACAACCTCAATTGATATAT

Basic information

species Vitis vinifera
transcript Vv10s0003g01480.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: LOC_Os01g10840.1 (Oryza sativa), 3'ss of exon 6
tctttcatggtagtcagtactcagtaggaagaaagtctttgcttgttttttctttctatgatatctttcatgttttcaccatgaatccaat-tttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCACCTGAACTCATATTTGGGGCCACAGAGTATACAACCTCAATTGATATAT
 |||  ||  ||     |   |  |       |  ||| |  ||  ||  | || ||||  || |    |  ||       |   |  | | || || ||||||   |||||| | |||||||||||||| || ||||| |  || || || ||||| ||||||||||| || || ||||||||||| |||||||| ||||
-cttggattataactgttggcctctcttccctagttctgttatttcttcattttgctattttaacaaatagattgatgatctccttgtactattccaccagGTTCCTGGTGAACCGAACATATCATACATTTGCTCTCGCTATTATCGTGCTCCTGAGCTCATATTTGGTGCAACCGAGTATACAACTTCAATTGACATAT

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: LOC_Os05g11730.1 (Oryza sativa), 3'ss of exon 6
tctttcatggtagtcagtactcagtaggaagaaagtctttgct-tgttttttctttctatgatatctttcatgttttcaccatgaatccaat-tttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCACCTGAACTCATATTTGGGGCCACAGAGTATACAACCTCAATTGATATAT
  || ||   |  ||     |      || |   |       | |  ||||  |   | |||| |   |    |  |  |||| |||  | | || ||||||||   ||||||| | || |||||||| ||||| || || | |||||||||||| || ||||||||||| || || || ||||| || ||||| |||||||
--ttacacctttttccaccttattccagatgtttgctacaattgtacttttgataattttgatcttactgtcctaatatccattaatttactattccatcagGTCCCAGGTGAACCCAATATATCATATATATGCTCACGCTACTACCGAGCACCGGAGCTCATATTTGGTGCAACTGAATATACTACATCAATAGATATAT

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G045330_T02 (Zea mays), 3'ss of exon 6
tctttcatggtagtcagtactcagtaggaag-aaagtctttgcttgttttttctt--tctatgatatctttcatgttttcaccatgaatccaattttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCACCTGAACTCATATTTGGGGCCACAGAGTATACAACCTCAATTGATATAT
   || |  ||| |   |      ||  ||    | ||||| ||||| |    |   ||| ||||     |  |  |     | | |  |   |||   |||| ||   |||||| | |||||||| |||||||| ||||||| ||| || || ||||| ||||||||||| || || ||||||||||  ||||| || ||||
-acttgactgtaattcatgtgttataataattggactctttacttgtataccgtaaatctttgatccacatgttaatcagttccttatgctgcttt--gtcagATTCCTGGTGAACCGAACATATCTTACATATGCTCTCGTTACTATCGTGCCCCTGAGCTCATATTTGGTGCGACGGAGTATACAAGTTCAATAGACATAT

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G472625_T01 (Zea mays), 3'ss of exon 6
tctttcatggtagtcagtactcagtaggaag-aaagtctttgcttgttttttctttctatgatatctttcatgttttcacca--tgaatccaat-tttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCACCTGAACTCATATTTGGGGCCACAGAGTATACAACCTCAATTGATATAT
   || |  ||| |   |      ||  ||  | | ||||| ||||| |  | | | | |    |  | ||  |  | | ||  |  ||    | |||  |||| ||   |||||| | |||||||| |||||||| |||||||  || || || || || ||||||||||| || || ||||||||||| ||||| || ||||
gaattgactgtaattcatgtgttataacaattagattctttacttgtatgctgtattttt----ttatccacatactaatcagttccatatgttgttttgtcagATTCCTGGTGAACCGAACATATCTTACATATGCTCTCGTTATTATCGTGCTCCAGAGCTCATATTTGGAGCGACGGAGTATACAACTTCAATAGACATAT

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA04G06760.1 (Glycine max), 3'ss of exon 6
tctttcatggtagtcagtactcagtaggaagaaagtctttgcttgttttttctttctatgatatctt---tcatgttttcaccatgaatccaattttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCACCTGAACTCATATTTGGGGCCACAGAGTATACAACCTCAATTGATATAT
|  |  ||  |  |||        |     || ||| |  |  |  |     | | ||  |||||     |||| |  | ||| | |||    | | |||||||| ||||||||||| || ||||||||||||||||| || ||||| |||||||| |||||||||||||||||||||||||||||||  ||||||||||| |
ttctgtattctt-tcaacttatgttttagtgagagtgtgagactactacccatct-tacaatatccaggatcatttactaaccttcaattttgtct-catcagGTCAAAGGTGAAGCTAATATATCATACATATGTTCACGGTTCTATCGAGCACCAGAACTCATATTTGGGGCCACAGAGTATACAAGTTCAATTGATATTT

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA06G06850.1 (Glycine max), 3'ss of exon 6
-----tctttcatggtagtcagtactca-gtaggaagaaagtctttgcttgtttt-ttctttctatgatatctttcatgttttcaccatgaatccaattttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCACCTGAACTCATATTTGGGGCCACAGAGTATACAACCTCAATTGATATAT
     | | | ||   |     || |   ||  || | |      | |   | ||    | || | |||      ||| |  | ||| | |||    | | ||||||||  |||||||||| || ||||||||||||||||| || ||||| |||||||| ||||| ||||||||||||||||||||||| |  || |||||||| |
tgttctgtatgatttcaacttatatttttgtgagagggagactactacccatcttacaatatccaggat------catttactaaccttcaattttgtat-catcagGTCGAAGGTGAAGCTAATATATCATACATATGTTCACGATTCTATCGAGCACCAGAACTTATATTTGGGGCCACAGAGTATACCAGTTCGATTGATATTT

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA13G30060.2 (Glycine max), 3'ss of exon 6
tctttcatggtagtcagtactcagtaggaagaaagt-ctttgcttgttttttctttctatgat---atctttcatgttttcaccatgaatccaattttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCACCTGAACTCATATTTGGGGCCACAGAGTATACAACCTCAATTGATATAT
    ||||  ||  || ||  || ||    ||     ||||||     |     ||   |||    || |||| |||| | ||| | |       | ||||||||| ||||||||||| || ||||||||||||||||| || ||||| || || || ||||| |||||||| ||||||||||||||||  ||||||||||| |
--actcatctta--caatatccaataaattgatttcactttgcccccctccctctttactgacagaatgtttcttgttctaaccttcagattttgtctcatcagGTAAAAGGTGAAGCTAATATATCATACATATGTTCACGATTCTATCGCGCTCCAGAACTTATATTTGGCGCCACAGAGTATACAAGTTCAATTGATATTT

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA15G09090.1 (Glycine max), 3'ss of exon 6
tctttcatggtagtcagtactcagtaggaagaaagtctttgcttgttttttctttctatgatatctttcatgttttcacca---tgaatccaattttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCACCTGAACTCATATTTGGGGCCACAGAGTATACAACCTCAATTGATATAT
  | | |   ||  || ||   | | |     |  |  |  |      | | || |      || |||| |||| | || |   | ||      | ||||||||| ||||||||||| || ||||||||||||||||| || ||||| || || || ||||| |||||||| ||||||||||||||||  ||||||||||| |
catcttacaatatccaata---aattgatttcactttgtgcccctccctcttttccggcagaatgtttcttgttctaacaaccttcaaattttgtctcatcagGTAAAAGGTGAAGCTAATATATCATACATATGTTCACGATTCTATCGTGCTCCAGAACTTATATTTGGTGCCACAGAGTATACAAGTTCAATTGATATTT

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA06G43620.1 (Glycine max), 3'ss of exon 4
---tctttcatggtagtcagtact-cagtaggaagaaagtctttgcttgttttttctttctatgatatctttcatgttttcaccatgaatccaattttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCACCTGAACTCATATTTGGGGCCACAGAGTATACAACCTCAATTGATATAT
   | || ||| ||      || | || ||   || |  || |   ||    | | |||| |    |  |||| |||||  ||   | ||     | | ||||||| ||||||||||| || |||||| | |||||||| | ||||||||| ||||| ||||| || ||||| ||||| |||||||| || ||||||||||| |
agcttttgcattgtgactcctattacaatatcgagga--tcatatttttccatgtttttccaactgacatttcttgttt--acttgggatttttgtgtgatcagGTCAAAGGTGAAGCTAATATATCACATATATGTTCACTTTTCTACCGGGCACCAGAACTTATGTTTGGTGCCACTGAGTATACTACTTCAATTGATATTT

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA05G29200.1 (Glycine max), 3'ss of exon 5
---tctttcatggtagtcagtact-cagtag-gaagaaagtctttgcttgttttttctttctatgatatctttcatgttttcaccatgaatccaattttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCACCTGAACTCATATTTGGGGCCACAGAGTATACAACCTCAATTGATATAT
   | || ||| ||      || | || ||  || ||   | |||    || ||||   | | ||| || | |  |    | ||   | ||     | | ||||||| ||||||||||| || |||||| | |||||||| | ||||||||| ||||| ||||| || ||||| ||||| |||||||| || ||||||||||| |
agcttttgcattgtgactcctattacaatatcgaggatcatatttttccgtgtttttcctat-tgacatttcttgt----ttacttgggatttttgtgtgatcagGTCAAAGGTGAAGCTAATATATCACATATATGTTCACTTTTCTACCGGGCACCAGAACTTATGTTTGGTGCCACTGAGTATACTACTTCAATTGATATTT

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA08G12370.1 (Glycine max), 3'ss of exon 6
---tctttcatggtagtcagtact-cagtaggaagaaagtctttgcttgttttttctttctatgatatctttcatgttttcaccatgaatccaattttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCACCTGAACTCATATTTGGGGCCACAGAGTATACAACCTCAATTGATATAT
   | || ||| ||      || | || ||   || |  || |   ||    | | |||| |    || |||| |||||  ||   | ||     | | ||||||| |||||  |||| || |||||| |||||||||| | |||||| || ||||| ||||| || ||||| ||||| |||||||| || ||||||||||| |
aggttttgcattgtgactcctattacaatatccagga--tcatatttttccatgtttttccaaccgatatttcttgttt--acttgggatttttgtgtgatcagGTCAAAGGAAAAGCTAATATATCACACATATGTTCACTTTTCTATCGGGCACCGGAACTTATGTTTGGTGCCACTGAGTATACTACTTCAATTGATATTT

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT4G18710.1 (Arabidopsis thaliana), 3'ss of exon 5
tctttcatggtagtcagtactcagtagg--aagaaagtctttgcttgttttttctttctatgatatctttcatgttttcaccatgaatccaattttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCACCTGAACTCATATTTGGGGCCACAGAGTATACAACCTCAATTGATATAT
       |   | |  ||      ||     |       | |    ||| ||  ||||| |||| | | |||| ||         | |    ||| | |||||||||||||||||| ||||| || ||||| || || || |||||||| ||||| || ||||||||||| ||||| ||||| ||||| || |||||||| |
------gtaagactttgtgacatataaactcattcgacttgtagcggttgttgttttctgtgatct-tgtcat-ttactgttgaaatttacttttgcttcagGTTAAAGGTGAAGCCAACATTTCTTACATCTGCTCACGATTCTACCGTGCACCCGAGCTCATATTTGGTGCCACTGAGTACACAACTTCTATTGATATCT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110712383|gb|EE089944.1|EE089944
EST:     ACTTACTCACCAAGTTAAACTTTGTGACTTTTGGA-GTGCAAAAGTGCTA                         GTTAAAGGTGAAGCAAACATATCATACAT-TAGTTCCTC-TTTCTACCGAG
genomic: ACTTACTCACCAAGTTAAGCTTTGTGACTTT-GGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATAT-GTTC-TCGTTTCTACCGAG
EST: gi|30135526|gb|CB920864.1|CB920864
EST:     CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTA                         GTTAAAGGTGAAGCGAACATATCATACATATGTTCTCGTTTCTACC
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACC
EST: gi|349818413|gb|FQ409188.1|FQ409188
EST:     CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTA                         GTTAAAGGTGAAGCGAACATATCATACATATGTTCTCGTTTCTACCGAGCA
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA
EST: gi|110711352|gb|EE087735.1|EE087735
EST:     CACTTACTCACCA-GTTAAGCTTTGTGACTTTGGAAGTGCAAA-GTGCTA                         GTTAAAGGTGAAGCAA-C-TATCATACATATGGTCTCGTTTCTACCGAGCA
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA
EST: gi|349821008|gb|FQ404261.1|FQ404261
EST:     CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTA                         GTTAAAGGTGAAGCGAACATATCATACATATGTTCTCGTTTCTACCGAGCA
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA
EST: gi|349822004|gb|FQ408333.1|FQ408333
EST:     CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTA                         GTTAAAGGTGAAGCGAACATATCATACATATGTTCTCGTTTCTACCGAGCA
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA
EST: gi|30255733|gb|CB971865.1|CB971865
EST:     CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTA                         GTTAAAGGTGAAGCGAACACATCATACATATGTTCTCGTTTCTACCGAGCA
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA
EST: gi|349814529|gb|FQ399169.1|FQ399169
EST:     CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTA                         GTTAAAGGCGAAGCGAACATATCATACATATGTTCTCGTTTCTACCGAGCA
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA
EST: gi|110713972|gb|EE090359.1|EE090359
EST:     CACTTACTCACCAA-TTAAGCTTTGTGACTTTTGAAGTGCAAAAGTGCTA                         NTTAAAGGTGAAGCAA-CATATCATACATATGTTCTCGTTTCTACCGAGCA
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA
EST: gi|349813455|gb|FQ413689.1|FQ413689
EST:     CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTA                         GTTAAAGGTGAAGCGAACATATCATACATATGTTCTCGTTTCTACCGAGCA
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA
EST: gi|352786166|gb|FQ478777.1|FQ478777
EST:     CACTTACTCACCAAGTTAAGCTTTGCGACTTTGGAAGTGCAAAAGTGCTA                         GTTAAAGGTGAAGCGAACATATCATACATATGTTCTCGTTTCTACCGAGCA
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA
EST: gi|349820741|gb|FQ408570.1|FQ408570
EST:     CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTA                         GTTAAAGGTGAAGCGAACATATCATACATATGTTCTCGTTTCTACCGAGCA
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA
EST: gi|349819490|gb|FQ413374.1|FQ413374
EST:     CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTA                         GTTAAAGGTGAAGCGAACATATCATACATATGTTCTCGTTTCTACCGAGCA
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA
EST: gi|71881193|gb|DT030248.1|DT030248
EST:     CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTA                         GTTAAAGGTGAAGCGAACATATCATACATATGTTCTCGTTTCTACCGAG
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAG
EST: gi|351041679|gb|FQ455889.1|FQ455889
EST:     CACTTACTCACCAAGTTAAGCTTTGCGACTTTGGAAGTGCAAAAGTGCTA                         GTTAAAGGTGAAGCGAACATATCATACATATGTTCTCGTTTCTACCGAGCA
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA
EST: gi|110713489|gb|EE089456.1|EE089456
EST:     CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCGAAAGTGCTA                         GTTAAAGGTGAAACAA-CATATCATACATATGTTCTCGTTTCTACCGAGCA
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA
EST: gi|349812888|gb|FQ410530.1|FQ410530
EST:     CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTA                         GTTAAAGGTGAAGCGAACATATCATACATATGTTCTCGTTTCTACCGAGCA
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA
EST: gi|349818025|gb|FQ408014.1|FQ408014
EST:     CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTA                         GTTAAAGGTGAAGCGAACATATCATACATATGTTCTCGTTTCTACCGAGCA
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA
EST: gi|351045211|gb|FQ451659.1|FQ451659
EST:     CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGGAGTGCAAAAGTGCTA                         GTTAAAGGTGAAGCGAACATATCATACATATGTTCTCGTTTCTACCGAGCA
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA
EST: gi|110712650|gb|EE087882.1|EE087882
EST:     CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTA                         GTTAAAGGTGAAGCAA
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAA
EST: gi|352794803|gb|FQ475298.1|FQ475298
EST:     CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTA                         GTTAAAAGGTGAAGCCAACATATAATACATATGTTCTC
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAA-GGTGAAGCAAACATATCATACATATGTTCTC
EST: gi|349808118|gb|FQ403305.1|FQ403305
EST:     CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTA                         GTTAAAGGTGAAGCGAACATATCATACATATGTTCTCGTTTCTACCGAGCA
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA
EST: gi|110711542|gb|EE088143.1|EE088143
EST:     CACCTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTA                         GTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTAC
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTAC
EST: gi|30136670|gb|CB922008.1|CB922008
EST:     CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTA                         GTTAAAGGTGAAGCGAACATATCATACATATGTTCTCGTTTCTACCGAGCA
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA
EST: gi|71881129|gb|DT030184.1|DT030184
EST:     CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTA                         GTTAAAGGTGAAGC
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGC
EST: gi|349818252|gb|FQ409027.1|FQ409027
EST:     CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTA                         GTTAAAGGTGAAGCGAACATATCATACATATGTTCTCGTTTCTACCGAGCA
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA
EST: gi|349819219|gb|FQ412113.1|FQ412113
EST:     CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTA                         GTTAAAGGTGAAGCGAACATATCATACATATGTTCTCGTTTCTACCGAGCA
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA
EST: gi|349809698|gb|FQ398305.1|FQ398305
EST:     CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTA                         GTTAAAGGTGAAGCGAACATATCATACATATGTTCTCGTTTCTACCGAGCA
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA
EST: gi|349820687|gb|FQ408516.1|FQ408516
EST:     CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTA                         GTTAAAGGTGAAGCGAACATATCATACATATGTTCTCGTTTCTACCGAGCA
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA
EST: gi|349823319|gb|FQ402518.1|FQ402518
EST:     CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTA                         GTTAAAGGTGAAGCGAACATATCATACATATGTTCTCGTTTCTACCGAGCA
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA
EST: gi|110687697|gb|EE065401.1|EE065401
EST:     CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTA                         GTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA
EST: gi|349811905|gb|FQ410702.1|FQ410702
EST:     CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTA                         GTTAAAGGTGAAGCGAACATATCATACATATGTTCTCGTTTCTACCGAGCA
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA
EST: gi|349815183|gb|FQ400338.1|FQ400338
EST:     TACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTA                         GTTAAAGGTGAAGCGAACATATCATACATATGTTCTCGTTTCTACCGAGCA
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA
EST: gi|71888939|gb|DT037994.1|DT037994
EST:     CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTA                         GTTAAAGGTGAAGCGAACATATCATACATATGTTCTCGTTTCTACCGAGCA
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA
EST: gi|110690114|gb|EE066940.1|EE066940
EST:     CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTA                         GTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA
EST: gi|349820958|gb|FQ408666.1|FQ408666
EST:     CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTA                         GTTAAAGGCGAAGCGAACATATCATACATATGTTCTCGTTTCTACCGAGCA
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA
EST: gi|110711670|gb|EE088415.1|EE088415
EST:     CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTA                         GTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA
EST: gi|351015241|gb|FQ445525.1|FQ445525
EST:     CACTTACTCACCAAGTTAAGCTTTGCGACTTTGGAAGTGCAAAAGTGCTA                         GTTAAAGGTGAAGCGAACATATCATACATATGTTCTCGTTTCTACCGAGCA
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA
EST: gi|349814811|gb|FQ410034.1|FQ410034
EST:     CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTA                         GTTAAAGGTGAAGCGAACATATCATACATATGTTCTCGTTTCTACCGAGCA
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA
EST: gi|110713041|gb|EE088616.1|EE088616
EST:     ACTTACTCCCCA-GTTAATCTTTGTGACTTTGGAAGTTGCAAA-GTGCTA                         GTTAAAGGTGAAGCCAACATATACATAGATATG
genomic: ACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGT-GCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATAT-CATACATATG
EST: gi|349819618|gb|FQ413502.1|FQ413502
EST:     CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTA                         GTTAAAGGTGAAGCGAACATATCATACATATGTTCTCGTTTCTACCGAGCA
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA
EST: gi|349820569|gb|FQ404064.1|FQ404064
EST:     CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTA                         GTTAAAGGTGAAGCGAACATATCATACATATGTTCTCGTTTCTACCGAGCA
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA
EST: gi|110719262|gb|EE097039.1|EE097039
EST:     CACTTACTCANCNAGTTAAGCTTTGTGACTTTGAAAGTGCAAAAGTGCTA                         GTTAAAGG-GAAGCAAACATATCATACATATGTTCTCGGTTTCTAC-GAGC
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCG-TTTCTACCGAGC
EST: gi|351045218|gb|FQ451666.1|FQ451666
EST:     CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGGAGTGCAAAAGTGCTA                         GTTAAAGGTGAAGCGAACATATCATACATATGTTCTCGTTTCTACCGAGCA
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA
EST: gi|110712783|gb|EE088141.1|EE088141
EST:     CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTA                         GTTAAAGGTGAAGCGAACATATCATACATATGTTCTCGTTTCTACCGAGCA
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA
EST: gi|110713002|gb|EE088542.1|EE088542
EST:     CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTA                         GTTAAAAGTGAAGCGGACATATCATACATATGTTCTCGTTTCTACCGAGCA
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA
EST: gi|110713463|gb|EE089416.1|EE089416
EST:     CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTA                         GTTAAAGGTGAAGCGAACATATCATACATATGTTCTCGTTTTCTACCGAGC
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTT-CTACCGAGC
EST: gi|110726198|gb|EE101771.1|EE101771
EST:     CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTA                         GTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA
EST: gi|110712273|gb|EE089706.1|EE089706
EST:     ACTTACTCACCAAGTTAAGCTTTGTGACTTTTGGA-GTGCAAAAGTGCTA                         GTTAAAGGTGAAGCNAACATATCATACATATGTTCTCGTTTCTAACGAGCA
genomic: ACTTACTCACCAAGTTAAGCTTTGTGACTTT-GGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA
EST: gi|349812635|gb|FQ409794.1|FQ409794
EST:     CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTA                         GTTAAAGGTGAAGCGAACATATCATACATATGTTCTCGTTTCTACCGAGCA
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA
EST: gi|351046670|gb|FQ453286.1|FQ453286
EST:     CACTTACTCACCAAGTTAAGCTTTGCGACTTTGGAAGTGCAAAAGTGCTA                         GTTAAAGGTGAAGCGAACATATCATACATATGTTCTCGTTTCTACCGAGCA
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA
EST: gi|349820534|gb|FQ404029.1|FQ404029
EST:     CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTA                         GTTAAAGGTGAAGCGAACATATCATACATATGTTCTCGTTTCTACCGAGCA
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA
EST: gi|110711844|gb|EE088789.1|EE088789
EST:     CACTTACTCACCAA-TTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTA                         GTTAAAGGTGAAGCAAACATATCAAAAAATATGTCCTCGTTCCTACCGAGC
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACA-TATGTTCTCGTTTCTACCGAGC
EST: gi|349827560|gb|FQ422428.1|FQ422428
EST:     CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTA                         GTTAAAGGTGAAGCGAACATATCATACATATGTTCTCGTTTCTACCGAGCA
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA
EST: gi|110699277|gb|EE076136.1|EE076136
EST:     CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGT-CAAAAGTGCTA                         GTTAAAGGTGAAGCGAACATATCATACATATGTTCTCGTTTCTACCGAGCA
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA
EST: gi|33405718|gb|CF211345.1|CF211345
EST:     ACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAAGTGCTA                         GTTAAAAGGTGAAAGCGAACATATCATACATATGTTCTCGTTTCTACCGAG
genomic: ACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAA-GTGCTAgtatgtcaat ... ttttcatcagGTTAAA-GGTGAA-GCAAACATATCATACATATGTTCTCGTTTCTACCGAG
EST: gi|349820352|gb|FQ403968.1|FQ403968
EST:     CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTA                         GTTAAAGGTGAAGCGAACATATCATACATATGTTCTCGTTTCTACCGAGCA
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA
EST: gi|352790221|gb|FQ481420.1|FQ481420
EST:     CACTTACTCACCAAGTTAAGCTTTGCGACTTTGGAAGTGCAAAAGTGCTA                         GTTAAAGGTGAAGCGAACATATCATACATATGTTCTCGTTTCTACCGAGCA
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA
EST: gi|351023667|gb|FQ448218.1|FQ448218
EST:     CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTA                         GTTAAAGGTGAAGCGAACATATCATACATATGTTCTCGTTTCTACCGAGCA
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA
EST: gi|110391404|gb|EC956378.1|EC956378
EST:     CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTA                         GTTAAAGGTGAAGCGAACATATCATACATATGTTCTCGTTTCTACCGAGCA
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA
EST: gi|110713575|gb|EE089626.1|EE089626
EST:     CACTTACTCACCAAGTTAAACTTTGTGACTTTGGAAGTGCAAAA-TGCTA                         GTTAAAGGTGGAA-CAAAC-TATCCTACATATGTTCTCGGTTCTACCGAGC
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTG-AAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGC
EST: gi|110699260|gb|EE076105.1|EE076105
EST:     CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTA                         GTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA
genomic: CACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaat ... ttttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttctttctatgatatctttcatgttttcaccatgaatccaattttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCACCTGAACTCATATTTGGGGCCACAGAGTATACAACCTCAATTGATATAT
                                             ttttcatc  CT-rich tract
                                           aattttcat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tctttcatggtagtcagtactcagtaggaagaaagtctttgcttgttttttctttctatgatatctttcatgttttcaccatgaatccaattttcatcagGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCACCTGAACTCATATTTGGGGCCACAGAGTATACAACCTCAATTGATATAT

- -ttcatgg
- - - - - - - - - - - - - ggaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caccatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatccaa