Sequence
atgc intronic sequence ATGC exonic sequence...taagcaaactagccagattactagtagtatgaaccttggatagtattagctgggaagcaaatattctttctaattatgtgtgcttactttttgttcgcagTACTTGAAACATTTTCAAACAAAACAACTGCCTGTACTGGAGCGTTTTGCACTCCTTATATCAGTCACAGTGATATGGGCATATGCACATCTCTTGACAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0003g01460.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA06G06840.1 (Glycine max), 3'ss of exon 6
-taagcaaactagccagattactagta-gtatgaaccttggatagtattagctgggaagcaaatattctttctaattatg-tgtgcttactttttgttcgcagTACTTGAAACATTTTCAAACAAAACAACTGCCTGTACTGGAGCGTTTTGCACTCCTTATATCAGTCACAGTGATATGGGCATATGCACATCTCTTGACAG
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gtgagggccaaagaagggtatccattgtgaatgtccaatatttactatttattatctattgaaaata--tagtaactatgctacgatta-ttgctgtttgcagTACTTGAAAAATTTTCATACAAGACAACTACCAATACTAGAGAGATTTGCTCTACTAATATCAACCACAGTGATATGGGCATATGCACATCTCTTAACAG
upper sequence: Vv10s0003g01460.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA04G06750.1 (Glycine max), 3'ss of exon 6
taagcaaactagccagattactagtagtatgaaccttggatagtattagctgggaagcaaat--attctttctaattatgtgtgcttactttttgttcgcagTACTTGAAACATTTTCAAACAAAACAACTGCCTGTACTGGAGCGTTTTGCACTCCTTATATCAGTCACAGTGATATGGGCATATGCACATCTCTTGACAG
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--ggtgaggccaaagaaaggcatatattgtgaatgcccaatattctctgtttattctctattgaaaatatagtaaacagttacgatttttgctgttttgcagTACTTGAAAAATTTTCATACAAGACAATTACCAATACTAGAGAGATTTGCTCTACTAATATCAACCACAGTGATATGGGCATATGCACATCTATTAACAG
upper sequence: Vv10s0003g01460.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA08G12360.1 (Glycine max), 3'ss of exon 7
taagcaaactagccagattactagtagtatgaaccttggatagtattagctgggaagcaaatattctttctaattatgtgtgcttact-ttttgttcgcagTACTTGAAACATTTTCAAACAAAACAACTGCCTGTACTGGAGCGTTTTGCACTCCTTATATCAGTCACAGTGATATGGGCATATGCACATCTCTTGACAG
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------------------------------------------------gtcaaataccaaa-agccttgtcactaacctatcctaattgtgttgtgtgcagTACTTGAAAAATTTTCAGATAAGACAAGTACCTATACTAGAGAGATTTGCTCTACTCATATCAACAACAGTGATATGGGCATATGCACATTTGTTAACAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30133322|gb|CB918661.1|CB918661EST: GCGTGGAAATTGGCATACCCATGCTTTTCCTATTTATTGCCTTCTCCCAG TACTTGAAACATTTTCAAACAAAACAACTGCCTGTACTGGAGCGTTTTGCA
genomic: GCGTGGAAATTGGCATACCCATGCTTTTCCTATTTATTGCCTTCTCCCAGgtaaacagca ... ttgttcgcagTACTTGAAACATTTTCAAACAAAACAACTGCCTGTACTGGAGCGTTTTGCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttagctgggaagcaaatattctttctaattatgtgtgcttactttttgttcgcagTACTTGAAACATTTTCAAACAAAACAACTGCCTGTACTGGAGCGTTTTGCACTCCTTATATCAGTCACAGTGATATGGGCATATGCACATCTCTTGACAG
tgcttac putative branch site (score: 2)
cttactttttgttc CT-rich tract
aaatattctttctaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
taagcaaactagccagattactagtagtatgaaccttggatagtattagctgggaagcaaatattctttctaattatgtgtgcttactttttgttcgcagTACTTGAAACATTTTCAAACAAAACAACTGCCTGTACTGGAGCGTTTTGCACTCCTTATATCAGTCACAGTGATATGGGCATATGCACATCTCTTGACAG
-aagcaaa
- - - - ctagcca
- - - - - - - - - - - - - -tatgaac
- - - - - - - - - - - - - - - - - - tggatag
- - - - - - - - - - - - - - - - - - - - - - - tagctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgtgc