Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggcttataatgtacctttttctccctaatattgcaattttacaggataaatgatcataacacactctctttaccttgttcccgctctttcttctcttcctttttctcctcttcctttttcctatagGCTGAGAAAAGGAGGCAAAAGGAGGAGCTTCGCAGGGAAAAGGAGGCAGTGAGACTCAAAGCTTCAATTGAAAAGGCAACTGCACGTAGAATTGCTAGAG

Basic information

species Vitis vinifera
transcript Vv10s0003g00290.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g00290.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT1G28420.1 (Arabidopsis thaliana), 3'ss of exon 6
gtggcttataatgtacctttttctccctaatattgcaattttacaggataaatgatcataacacactctctttaccttgttcccgctctttcttctcttcctttttctcctcttcctt-tttcctatagGCTGAGAAAAGGAGGCAAAAGGAGGAGCTTCGCAGGGAAAAGGAGGCAGTGAGACTCAAAGCTTCAATTGAAAAGGCAACTGCACGTAGAATTGCTAGAG
||   ||   |   | || |  |    |  |||| |  |  ||     |   | ||| |       |      || ||  |  |     |||      |     || || | ||  |    |  || |||||||||||| || |||||| || ||| ||||  | || || || ||  | |||| |||   | | ||||| ||||||||||||||||||||||| |  |
gtaagtttggaa--aactctgcccagttgttatt-ctttggtatttttttgttaatcctgctgagattgagcaacttttgtggcaagagttcagagagtgaaaattatctttttgttgacatgttaaagGCTGAGAAAAAGAAGCAAAAAGACGAGATTCGTCGAGAGAAAGACGCTATTAGACGCAAGCTTGCCATTGAGAAGGCAACTGCACGTAGAATTGCCAAGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accttgttcccgctctttcttctcttcctttttctcctcttcctttttcctatagGCTGAGAAAAGGAGGCAAAAGGAGGAGCTTCGCAGGGAAAAGGAGGCAGTGAGACTCAAAGCTTCAATTGAAAAGGCAACTGCACGTAGAATTGCTAGAG
            ctctttcttctcttcc  CT-rich tract
                            tttttct  TA-rich tract