Sequence
atgc intronic sequence ATGC exonic sequencegtatatatattttgaacctagtcatcatcctaaactcataaatgggcttggagctttgaagtatgaaaatggcttatgtacattgcagAATGAAGATGGTGGGTGGGGATTGCATATTGAGGGACACAGCACAATGTTTTGTACAACACTTAGCTACATTTGTATGCGTATCCTTGGAGAAGGGCGCG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0054g01520.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA08G24160.1 (Glycine max), 3'ss of exon 3
-----------------------------------------------------------------------------------------------------------gtatatatattttgaacctagtcatc-atcctaaactcataaatgggcttggagctttgaagtatgaaaatggcttatgtacattgcagAATGAAGATGGTGGGTGGGGATTGCATATTGAGGGACACAGCACAATGTTTTGTACAACACTTAGCTACATTTGTATGCGTATCCTTGGAGAAGGGCGCG
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gtatagttattcaattttaggatgcatttgtttaaccaagcataatgtagagatacaaaattgtaacattttcctcggtcaaatttcttgtatcttttaattaacttgt-tgtatttgcttaatcaggaagtttataatctattcattgcaacaataagtaattaatattatcccttttgttctttcat-ttaaagAATGAAGATGGAGGATGGGGACTACACATAGAGGGTCATAGCACTATGTTTTGTACAGCACTGAACTATATATGCATGCGAATTCTTGGAGAAGGACCTA
upper sequence: Vv09s0054g01520.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: EFJ34577 (Selaginella moellendorffii), 3'ss of exon 3
gtatatatattttgaacctagtcatcatcctaaactcataaatgggcttggagctt--tgaagtatgaaaatggcttatgtacattgcagAATGAAGATGGTGGGTGGGGATTGCATATTGAGGGACACAGCACAATGTTTTGTACAACACTTAGCTACATTTGTATGCGTATCCTTGGAGAAGGGCGCG
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-------------------------------------gtgtgtaatctttctttctagcgatgttcgtgaattttttgtctttctggaagAACGAAGATGGCGGCTGGGGATTGCACATTGAAGGGCACAGCACGATGTTTGGCACTGTACTTGTTTATGTTTCTCTACGGCTACTTGGCCAAGAACCAG
upper sequence: Vv09s0054g01520.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: EFJ34967 (Selaginella moellendorffii), 3'ss of exon 3
gtatatatattttgaacctagtcatcatcctaaactcataaatgggcttggagctt--tgaagtatgaaaatggcttatgtacattgcagAATGAAGATGGTGGGTGGGGATTGCATATTGAGGGACACAGCACAATGTTTTGTACAACACTTAGCTACATTTGTATGCGTATCCTTGGAGAAGGGCGCG
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-------------------------------------gtgtgtaatctttctttctagcgatgttcgtgaattttttgtctttctggaagAACGAAGATGGTGGCTGGGGATTGCACATTGAAGGGCACAGCACGATGTTTGGCACTGTACTTGTTTATGTTTCTCTACGGCTACTTGGCCAAGAACCAG
upper sequence: Vv09s0054g01520.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: EFJ09445 (Selaginella moellendorffii), 3'ss of exon 3
gtatatatattttgaacctagtcatcatcctaaactcataaatgggcttggagctt--tgaagtatgaaaatggcttatgtacattgcagAATGAAGATGGTGGGTGGGGATTGCATATTGAGGGACACAGCACAATGTTTTGTACAACACTTAGCTACATTTGTATGCGTATCCTTGGAGAAGGGCGCG
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-------------------------------------gtgtgtaatctttctttctagcgatgttcgtgaatt-ttcgtctttctggaagAACGAAGATGGCGGCTGGGGATTGCACATTGAAGGGCACAGCACGATGTTTGGCACTGTACTTGTTTATGTTTCTCTACGGCTACTTGGCCAAGAACCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.actcataaatgggcttggagctttgaagtatgaaaatggcttatgtacattgcagAATGAAGATGGTGGGTGGGGATTGCATATTGAGGGACACAGCACAATGTTTTGTACAACACTTAGCTACATTTGTATGCGTATCCTTGGAGAAGGGCGCG
tatgaaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatatatattttgaacctagtcatcatcctaaactcataaatgggcttggagctttgaagtatgaaaatggcttatgtacattgcagAATGAAGATGGTGGGTGGGGATTGCATATTGAGGGACACAGCACAATGTTTTGTACAACACTTAGCTACATTTGTATGCGTATCCTTGGAGAAGGGCGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA