Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttgattttttatggaaacaatttctttttcctatgaatatgctacgcatgcatgaaacacacatttaaaattgtttaatattgcagGAGGATCTCTACTACCCCCATCCCCTAATACAAGATCTAATGTGGGATAGTTTGTACATATGTACCGAGCCTCTTCTTACTCGTTGGCCCTTCAAAAAGT

Basic information

species Vitis vinifera
transcript Vv09s0054g01410.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0054g01410.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA08G24160.1 (Glycine max), 3'ss of exon 6
gtaagttttgattttttatggaaacaatttctttttcctatgaatatgctacgcatgcatgaaacacacatttaaa-attgtttaatattgcagGAGGATCTCTACTACCCCCATCCCCTAATACAAGATCTAATGTGGGATAGTTTGTACATATGTACCGAGCCTCTTCTTACTCGTTGGCCCTTCAAAAAGT
|| |        |||   |    | ||| | | |     ||| | ||        |  ||||||   ||| ||    ||| | | | ||| ||||| ||||| || || || |||||  |  ||||||||||||| ||||||||||| ||||||| ||| |||||  | |||||||||||||| ||||| ||||
gtgaaagacatctttaattaatcagaatgtgtgt-----atgtacatatcctttttctatgaaaatgacagttgtctattatatca-attacagGAAGATCTTTATTATCCACATCCTTTGGTACAAGATCTAATATGGGATAGTTTATACATATTTACTGAGCCATTGCTTACTCGTTGGCCTTTCAACAAGT

upper sequence: Vv09s0054g01410.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA07G00330.1 (Glycine max), 3'ss of exon 6
gtaagttttgattttttatggaaacaatttctttttcctatgaatatgctacgc-atgcatgaaacacacatttaaaattgtttaatattgcagGAGGATCTCTACTACCCCCATCCCCTAATACAAGATCTAATGTGGGATAGTTTGTACATATGTACCGAGCCTCTTCTTACTCGTTGGCCCTTCAAAAAGT
|| |        |||   |    ||||| | | | | | |   || |  |  || ||| |    | |  | || |   || | | | ||  ||||| ||||| ||||| ||||||||  | |||||||| ||||| ||||||||||| |||||||  || || || || |||||||||||||| ||||| ||||
gtgaaagacatatttaattaatcacaatgtgtgtgtgc-acatatcttttttgctatgaaaatgatagtcgttca---ttatgtca-atcacagGAAGATCTTTACTATCCCCATCCTTTGATACAAGACCTAATATGGGATAGTTTATACATATTCACTGAACCGCTACTTACTCGTTGGCCTTTCAACAAGT

upper sequence: Vv09s0054g01410.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA15G07110.1 (Glycine max), 3'ss of exon 7
----------gtaagttttgattttttatggaaacaatttctttttcctatgaatatgctacgcatgcatgaaacacacatttaaaattgtttaatattgcagGAGGATCTCTACTACCCCCATCCCCTAATACAAGATCTAATGTGGGATAGTTTGTACATATGTACCGAGCCTCTTCTTACTCGTTGGCCCTTCAAAAAGT
           |  |  |  |||||||||  |   || |||   |   ||||  ||   |    ||| || |||   | |||||    | ||  |  || ||||| ||||| ||||| |||||||     |||||||||||| | ||||||||||||||  |||  |||||||||||||| | | ||||||| ||||| ||||
ataagagtgcatttgaataaattttttattaattaaaattcacatatatatg--taatttttttatg-ataaaaatgatatttattcattttatactttacagGAAGATCTTTACTATCCCCATCATTGGATACAAGATCTATTATGGGATAGTTTGTATGTATTCACCGAGCCTCTTCTAAATTGTTGGCCTTTCAACAAGT

upper sequence: Vv09s0054g01410.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA15G10870.1 (Glycine max), 3'ss of exon 7
-gtaagttttgattttttatggaaacaatttctttttcct--atgaatatgctacgcatgcatga-aacacacatttaaaattg--ttta-atattgcagGAGGATCTCTACTACCCCCATCCCCTAATACAAGATCTAATGTGGGATAGTTTGTACATATGTACCGAGCCTCTTCTTACTCGTTGGCCCTTCAAAAAGT
 ||  |  | | ||   |||| | | | |  ||    |    ||| |||||  |    |  |||| || | |  || |   ||   |||| ||||||||||| ||||| ||||| || |||||    |||||||||||||| ||||||||||||||  | |     ||||| || ||||| |||||||| || || ||||
agtccggatgggttaaatatgtataaattaactacaacgagaatgcatatgtaaaatgtttatgacaataaatgttaattgtttgttttatatattgcagGAAGATCTTTACTATCCTCATCCTTGGATACAAGATCTAATATGGGATAGTTTGTATTTGTTCGTTGAGCCACTCCTTACACGTTGGCCTTTGAACAAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgaatatgctacgcatgcatgaaacacacatttaaaattgtttaatattgcagGAGGATCTCTACTACCCCCATCCCCTAATACAAGATCTAATGTGGGATAGTTTGTACATATGTACCGAGCCTCTTCTTACTCGTTGGCCCTTCAAAAAGT
                                         gtttaat  putative branch site (score: 4)
                       aaacacacatttaaaa  TA-rich tract