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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttagctttctaacagaaaagctttcgtatttcctgtgaatataacgtacatgcatgaaacactcattcaaaattgtttattgcagGAGGATCTCTACTACCCCCATCCCCTAATACAAGATCTGATGTGGGATGGTTTGTACATATGTACCGAGCCTCTTCTTACTCGTTGGCCCTTCAACAAGT

Basic information

species Vitis vinifera
transcript Vv09s0054g01220.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0054g01220.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA08G24160.1 (Glycine max), 3'ss of exon 6
gtgagtttagctttctaacagaaaagctttcgtatttcctgtgaatataacgtacatgcatgaaacactcattcaaaattgtttattgcagGAGGATCTCTACTACCCCCATCCCCTAATACAAGATCTGATGTGGGATGGTTTGTACATATGTACCGAGCCTCTTCTTACTCGTTGGCCCTTCAACAAGT
||||    |  | | |||   |  ||  |  || | |  |    ||      |  ||| |    ||| |  |  |  ||  |  ||| ||||| ||||| || || || |||||  |  |||||||||| || |||||| |||| ||||||| ||| |||||  | |||||||||||||| ||||||||||
gtgaaag-acatctttaattaatcagaatgtgtgtatg-tacatatcctttttctatgaaaatgacagttgtctattat-atcaattacagGAAGATCTTTATTATCCACATCCTTTGGTACAAGATCTAATATGGGATAGTTTATACATATTTACTGAGCCATTGCTTACTCGTTGGCCTTTCAACAAGT

upper sequence: Vv09s0054g01220.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA07G00330.1 (Glycine max), 3'ss of exon 6
gtgagtttagctttctaacagaaaagctttcgtatttcctgtgaatataacgtac-atgcatgaaacactcattcaaaattgtttattgcagGAGGATCTCTACTACCCCCATCCCCTAATACAAGATCTGATGTGGGATGGTTTGTACATATGTACCGAGCCTCTTCTTACTCGTTGGCCCTTCAACAAGT
||||    |  | | |||   |  |   |  || | | |     || |    | | ||| |    | | || ||||  || ||  ||  ||||| ||||| ||||| ||||||||  | |||||||| || || |||||| |||| |||||||  || || || || |||||||||||||| ||||||||||
gtgaaag-acatatttaattaatcacaatgtgtgtgtgc-acatatcttttttgctatgaaaatgatagtcgttcattat-gtcaatcacagGAAGATCTTTACTATCCCCATCCTTTGATACAAGACCTAATATGGGATAGTTTATACATATTCACTGAACCGCTACTTACTCGTTGGCCTTTCAACAAGT

upper sequence: Vv09s0054g01220.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA15G07110.1 (Glycine max), 3'ss of exon 7
------gtgagttt-----agctttctaacaga-aaagctttcgtatttcctgtgaatataacgtacatgcatgaaacactcattcaaaattgtttattgcagGAGGATCTCTACTACCCCCATCCCCTAATACAAGATCTGATGTGGGATGGTTTGTACATATGTACCGAGCCTCTTCTTACTCGTTGGCCCTTCAACAAGT
      |||  |||     |  ||| ||  |   |||  |  | ||| |  ||| | | |    |  ||  |    | | | |||||   || |   || ||||| ||||| ||||| |||||||     |||||||||||  | |||||| |||||||  |||  |||||||||||||| | | ||||||| ||||||||||
ataagagtgcatttgaataaattttttattaattaaaattcacatatata-tgtaatttttttatg-ataaaaatgatatttattcatt-ttatactttacagGAAGATCTTTACTATCCCCATCATTGGATACAAGATCTATTATGGGATAGTTTGTATGTATTCACCGAGCCTCTTCTAAATTGTTGGCCTTTCAACAAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctgtgaatataacgtacatgcatgaaacactcattcaaaattgtttattgcagGAGGATCTCTACTACCCCCATCCCCTAATACAAGATCTGATGTGGGATGGTTTGTACATATGTACCGAGCCTCTTCTTACTCGTTGGCCCTTCAACAAGT
        atataac  putative branch site (score: 3)
                                  attcaaaattgtttat  TA-rich tract