Sequence
atgc intronic sequence ATGC exonic sequence...tgattccttctgccctccctgagttttctcttacttttccagcatttggatgcttttcatgtggttcctatgagtgaattgcttggcctattttttgcagCTTGCCTGGACATGCTATAATTTCTACCAGTCAACACCAACAAAATTGGCTGGAGAGAACTATTTCTTCCACTCTGGGCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0054g00230.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA08G23730.1 (Glycine max), 3'ss of exon 11
---tgattccttctgccctc-cctgagttttctcttacttttccagcatttggatgcttttcatgtggttcctatgagtgaattgcttggcctattttttgcagCTTGCCTGGACATGCTATAATTTCTACCAGTCAACACCAACAAAATTGGCTGGAGAGAACTATTTCTTCCACTCTGGGCAG
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atctcactgctcattccttctccagtgcatgtggatatttattttgcaacgatattgatattatgaggtaatcactgaagatatgc---acct-tactttgcagCTTGCTTGGACATGTTATAACTTCTACCAATCAACTCCAACAAAATTGGCTGGAGAGAACTATTTCTTTCATTCTGGGCAG
upper sequence: Vv09s0054g00230.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA07G02290.1 (Glycine max), 3'ss of exon 10
----tgattccttctgccctccctgagttttctcttacttttccagcatttggatgcttttcatgtggttcctatgagtgaattgcttggcctattttttgcagCTTGCCTGGACATGCTATAATTTCTACCAGTCAACACCAACAAAATTGGCTGGAGAGAACTATTTCTTCCACTCTGGGCAG
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atcacactgtgcattccttctccagtgcatgtggatatttatggtgcaatgatattgatattatgaggtaatcactgaagatatgt---acct-ttctttgcagCTTGCTTGGACATGTTATAACTTCTACCAATCAACTCCAACAAAATTGGCTGGGGAGAACTATTTCTTTCATTCTGGGCAG
upper sequence: Vv09s0054g00230.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT3G21160.1 (Arabidopsis thaliana), 3'ss of exon 11
---------------------------------------tgattccttctgccctccctgagttttctcttact-tttccagcatttggatgcttttcatgtggttcctatgagtgaattgcttggcctattttttgcagCTTGCCTGGACATGCTATAATTTCTACCAGTCAACACCAACAAAATTGGCTGGAGAGAACTATTTCTTCCACTCTGGGCAG
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gtaaacttatgacttgaatgatctttgatcatagcgtcgtaagtgcttcagatctttcgaatttttcgctctctgcttttctgatttaggctgctgagatatagcctttattg-----ctattttccacatattttgcagCTTGCGTGGACATGTTATAACTTTTACCAATCAACTCCAACAAAACTGGCTGGGGAGAATTATTTCTTCAACTCTGGGAGT
upper sequence: Vv09s0054g00230.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT1G51590.1 (Arabidopsis thaliana), 3'ss of exon 11
tgattccttctgccctccctgagttttctcttacttttccagcatttggatgcttttcatgtggttcctatgagtgaattgcttggcctattttttgcagCTTGCCTGGACATGCTATAATTTCTACCAGTCAACACCAACAAAATTGGCTGGAGAGAACTATTTCTTCCACTCTGGGCAG
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-------------gtgccttagaatctcaattgtatgttgagtata-----actttctgctgtgtccttattgctgtttccctcactttact----gcagCTTGCCTGGACTTGTTATAACTTTTACCAATCGACACCAACGAAACTTGCTGGAGAGAACTATTTCTTCACTGCAGGGCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttggatgcttttcatgtggttcctatgagtgaattgcttggcctattttttgcagCTTGCCTGGACATGCTATAATTTCTACCAGTCAACACCAACAAAATTGGCTGGAGAGAACTATTTCTTCCACTCTGGGCAG
cctatttttt CT-rich tract
tatttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgattccttctgccctccctgagttttctcttacttttccagcatttggatgcttttcatgtggttcctatgagtgaattgcttggcctattttttgcagCTTGCCTGGACATGCTATAATTTCTACCAGTCAACACCAACAAAATTGGCTGGAGAGAACTATTTCTTCCACTCTGGGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
tgattcc
- - - - - - ccctccc
- - - - - - - - - - - - - - - - - - - - -gcatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcctatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttgg