1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...atatatatctatattgcaaattatataagatttggaaactctttgcaaccataggatgcatctctgatattactaatcttccacccttgaaaatgttcagGACACAGAAAAAATTGAAGAAGATTCTGATGAAGACATTCCAGAACTAACTCAATGGGAAGCAATTAGCTGGCTTGCTATTCTCACTCTATGGGTGTCTG
species | Vitis vinifera |
transcript | Vv09s0018g01840.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAACCGAATCTTTATAGTCCCATTGATGAG GACACAGAAAAAATTGAAGAAGATTCTGATGAAGACATTCCAGAACTAACTEST: gi|349830905|gb|FQ418189.1|FQ418189
genomic: CAACCGAATCTTTATAGTCCCATTGATGAGgtgagttctc ... aaatgttcagGACACAGAAAAAATTGAAGAAGATTCTGATGAAGACATTCCAGAACTAACT
EST: CAACCGAATCTTTATAGTCCCATTGATGAG GACACAGAAAAAATTGAAGAAGATTCTGATGAAGACATTCCAGAACTAACTEST: gi|351033483|gb|FQ462134.1|FQ462134
genomic: CAACCGAATCTTTATAGTCCCATTGATGAGgtgagttctc ... aaatgttcagGACACAGAAAAAATTGAAGAAGATTCTGATGAAGACATTCCAGAACTAACT
EST: CAACCGAATCTTTATAGTCCCATTGATGAG GACACAGAAAAAATTGAAGAAGATTCTGATGAAGACATTCCAGAACTAACTEST: gi|349830995|gb|FQ418279.1|FQ418279
genomic: CAACCGAATCTTTATAGTCCCATTGATGAGgtgagttctc ... aaatgttcagGACACAGAAAAAATTGAAGAAGATTCTGATGAAGACATTCCAGAACTAACT
EST: CAACCGAATCTTTATAGTCCCATTGATGAG GACACAGAAAAAATTGAAGAAGATTCTGATGAAGACATTCCAGAACTAACTEST: gi|161721025|gb|FC069979.1|FC069979
genomic: CAACCGAATCTTTATAGTCCCATTGATGAGgtgagttctc ... aaatgttcagGACACAGAAAAAATTGAAGAAGATTCTGATGAAGACATTCCAGAACTAACT
EST: TTTTCTTTCAGCTTAAAAGTCAACCGAATCTTTATAGTCCCATTGATGAG GACACAGAAAAAATTGAAGAAGATTCTGATGAAGACATTCCAGAACTAACT
genomic: TTTTCTTTCAGCTTAAAAGTCAACCGAATCTTTATAGTCCCATTGATGAGgtgagttctc ... aaatgttcagGACACAGAAAAAATTGAAGAAGATTCTGATGAAGACATTCCAGAACTAACT
caaccataggatgcatctctgatattactaatcttccacccttgaaaatgttcagGACACAGAAAAAATTGAAGAAGATTCTGATGAAGACATTCCAGAACTAACTCAATGGGAAGCAATTAGCTGGCTTGCTATTCTCACTCTATGGGTGTCTG
tactaat putative branch site (score: 1)
atattactaatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatatatctatattgcaaattatataagatttggaaactctttgcaaccataggatgcatctctgatattactaatcttccacccttgaaaatgttcagGACACAGAAAAAATTGAAGAAGATTCTGATGAAGACATTCCAGAACTAACTCAATGGGAAGCAATTAGCTGGCTTGCTATTCTCACTCTATGGGTGTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - caaatta
- - - - - - - - - - - - - - - - - - - - - - gcaacca
- - - - - - - - - - - - - - - - - - - - - - - - - - -ggatgca