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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtagtctatactttggatgcctatggattcattccttcctttgataaaaaatcttattagtatatacatatgcaagGTTCCTCTGTTTGCAAATATGGATGAAAGATTGCTTGATGCCATTTGTGAGAGGCTGCAACCGAGTTTATTCACGGAAAAAACTTACATAGTGCGGGAAG

Basic information

species Vitis vinifera
transcript Vv09s0018g00410.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0018g00410.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA08G23460.1 (Glycine max), 3'ss of exon 6
----gtacg-tagtctatactttggatgcctatggattcattccttcctttgataaaaaatcttattagtatatacatatgcaagGTTCCTCTGTTTGCAAATATGGATGAAAGATTGCTTGATGCCATTTGTGAGAGGCTGCAACCGAGTTTATTCACGGAAAAAACTTACATAGTGCGGGAAG
    |||   | | || | ||||  ||| |    |||  ||  |||| |||| | | || |||| |  |||||  |||   | |||||||||| ||||| || ||||||||| | ||||||||||| || |||||| | ||| | || |||||||  || ||   ||||||||||||| ||||||
gtgagtatactggcctgttcttt--atgacatgagatatatgtcttcatttgttcataagtctttt--gtatactcat---ccagGTTCCTCTCTTTGCCAACATGGATGAACGTTTGCTTGATGCTATATGTGAGCGACTGAAGCCTAGTTTATATACAGAGGGAACTTACATAGTGAGGGAAG

upper sequence: Vv09s0018g00410.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA07G02560.1 (Glycine max), 3'ss of exon 6
----gtacg-tagtctatactttggatgcctatggattcattccttcctttgataaaaaatcttattagtatatacatatgcaagGTTCCTCTGTTTGCAAATATGGATGAAAGATTGCTTGATGCCATTTGTGAGAGGCTGCAACCGAGTTTATTCACGGAAAAAACTTACATAGTGCGGGAAG
    |||   | | || | ||||    |   ||  ||  |   |||| |||  | | || |||| |  |||||| |||     |||||||||| ||||| || ||||||||| | ||||||||||| || |||||| |  || | || |||||||  || ||    |||||||||||| ||||||
gtgagtatactggcctgttctttatgag---atttatataagtcttcattttttcacaagtcttgt--gtatattcattc---agGTTCCTCTCTTTGCCAACATGGATGAACGTTTGCTTGATGCTATATGTGAGCGATTGAAGCCTAGTTTATATACAGAGGGCACTTACATAGTGAGGGAAG

upper sequence: Vv09s0018g00410.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT1G15990.1 (Arabidopsis thaliana), 3'ss of exon 4
gtacgtagtctatactttggatgcctatggattcattccttcctttgataaaaaatcttattagtatatacatatgcaagGTTCCTCTGTTTGCAAATATGGATGAAAGATTGCTTGATGCCATTTGTGAGAGGCTGCAACCGAGTTTATTCACGGAAAAAACTTACATAGTGCGGGAAG
||| ||  || | | |  | ||||   |  | |   |        | |  ||  || |  |  || | ||||       ||||||||||||||| ||||||||||||||||| ||||| || || ||||||||  |  | |||||| | ||||||||||  |||||||| ||||| ||||
gtaagttttc-acaatcagaatgc---taaaattgcttgagatactaactaactatgtgttctgtttctaca-------gGTTCCTCTGTTTGCTAATATGGATGAAAGATTACTTGACGCAATCTGTGAGAGATTAAAGCCGAGTCTTTTCACGGAAAGCACTTACATTGTGCGTGAAG

upper sequence: Vv09s0018g00410.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT1G19780.1 (Arabidopsis thaliana), 3'ss of exon 5
gtacgtagtctatactttggat-gcctatggattcattccttcctttgataaaaaatcttattagtatatacatatgcaagGTTCCTCTGTTTGCAAATATGGATGAAAGATTGCTTGATGCCATTTGTGAGAGGCTGCAACCGAGTTTATTCACGGAAAAAACTTACATAGTGCGGGAAG
||| ||  ||   | | || || |||||  ||| |    |||| ||  | ||  ||   | ||  |   |   | |||| ||||||||||||||| ||||||||||| ||||| || || || || |||||||| ||  | || ||| ||| ||| || |  |||||||||||||| ||||
gtaagttttcagaaatgtgaattgcctaaagatcctacacttcattc-acaaggaacaatgttctttcttttttttgca-gGTTCCTCTGTTTGCTAATATGGATGAGAGATTACTAGACGCAATATGTGAGAGACTAAAGCCAAGTCTATACACAGAGAGCACTTACATAGTGCGAGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatggattcattccttcctttgataaaaaatcttattagtatatacatatgcaagGTTCCTCTGTTTGCAAATATGGATGAAAGATTGCTTGATGCCATTTGTGAGAGGCTGCAACCGAGTTTATTCACGGAAAAAACTTACATAGTGCGGGAAG
                 ctttgat  putative branch site (score: 5)
                  tttgataaaaaatctt  TA-rich tract