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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtacccatacatttatacccttttcccatttcccaaagcaacaagccaagatcctctctcccactcactctctctctctctctctctctctctctctctctctccccttgctcaatgtgggtaactttaacataaatatatgtagagagagagtgatcaattgattaatgaggatgggtttgttttcagGTTCAAGGCGAAATGAATTGTATATTTCCCAAAGACCCTGGTCAG

Basic information

species Vitis vinifera
transcript Vv09s0002g04120.t01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110709243|gb|EE084535.1|EE084535
EST:     GCTCTCCGTACTTGGGCAATGCATCAGGAAACATGAGGAACCAACAGTGT                         GTTCAAGGCGAAATGAATTGTATATTTCCCAAAGACCCTGGTCAG
genomic: GCTCTCCGTACTTGGGCAATGCATCAGGAAACATGAGGAACCAACAGTGTgtaagtaccc ... ttgttttcagGTTCAAGGCGAAATGAATTGTATATTTCCCAAAGACCCTGGTCAG
EST: gi|110398271|gb|EC964511.1|EC964511
EST:     GCTCTCCGTACTTGGGCAATGCATCAGGAAACATGAGGAACCAACAGTGT                         GTTCAAGGCGAAATGAATTGTATATTTCCCAAAGACCCTGGTCAG
genomic: GCTCTCCGTACTTGGGCAATGCATCAGGAAACATGAGGAACCAACAGTGTgtaagtaccc ... ttgttttcagGTTCAAGGCGAAATGAATTGTATATTTCCCAAAGACCCTGGTCAG
EST: gi|110379188|gb|EC944367.1|EC944367
EST:     GCTCTCCGTACTTGGGCAATGCATCAGGAAACATGAGGAACCAACAGTGT                         GTTCAAGGCGAAATGAATTGTATATTTCCCAAAGACCCTGGTCAG
genomic: GCTCTCCGTACTTGGGCAATGCATCAGGAAACATGAGGAACCAACAGTGTgtaagtaccc ... ttgttttcagGTTCAAGGCGAAATGAATTGTATATTTCCCAAAGACCCTGGTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatatatgtagagagagagtgatcaattgattaatgaggatgggtttgttttcagGTTCAAGGCGAAATGAATTGTATATTTCCCAAAGACCCTGGTCAG
                            gattaat  putative branch site (score: 3)
                                            tttgttttc  putative PPT
                     atcaattgattaat  TA-rich tract