1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...agagccttctttccatcctttgatgtcatggatggttttgaaatcctattagtacttcactgggtttgaacctgcaaccaagtcctgttacattttacagGAAGCTCGTGTAAGATTTTCTGGATTTGGCAATGAGGAGGACGAGTGGGTGAATGTCAAAAAGGGAATACGAAAGCGGTCGATTCCTCTAGAGCCTTCAG
species | Vitis vinifera |
transcript | Vv09s0002g03660.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACGACGTTGCTGCATTCCTCACCTACAGAGTTCTTAGCTCTGGTGAACTT GAAGCTCGTGTAAGATTTTCTGGATTTGGCAATGAGGAGGACGAGTGGGTGEST: gi|349832345|gb|FQ420906.1|FQ420906
genomic: ACGACGTTGCTGCATTCCTCACCTACAGAGTTCTTAGCTCTGGTGAACTTgtaagatcct ... cattttacagGAAGCTCGTGTAAGATTTTCTGGATTTGGCAATGAGGAGGACGAGTGGGTG
EST: ACGACGTTGCTGCATTCCTCACCTACAGAGTTCTTAGCTCTGGTGAACTT GAAGCTCGTGTAAGATTTTCTGGGTTTGGCAATGAGGAGGACGAGTGGGTGEST: gi|294965677|gb|GW839132.1|GW839132
genomic: ACGACGTTGCTGCATTCCTCACCTACAGAGTTCTTAGCTCTGGTGAACTTgtaagatcct ... cattttacagGAAGCTCGTGTAAGATTTTCTGGATTTGGCAATGAGGAGGACGAGTGGGTG
EST: ACGACGTTGCTGCATTCCTCACCTACAGAGTTCTTAGCTCTGGTGAACTT GAAGCTCGTGTAAGATTTTCTGGATTTGGCAATGAGGAGGACGAGTGGGTGEST: gi|351019710|gb|FQ439527.1|FQ439527
genomic: ACGACGTTGCTGCATTCCTCACCTACAGAGTTCTTAGCTCTGGTGAACTTgtaagatcct ... cattttacagGAAGCTCGTGTAAGATTTTCTGGATTTGGCAATGAGGAGGACGAGTGGGTG
EST: ACGACGTTGCTGCATTCCTCACCTACAGAGTTCTTAGCTCTGGTGAACTT GAAGCTCGTGTAAGATTTTCTGGATTTGGCAATGAGGAGGACGAGTGGGTG
genomic: ACGACGTTGCTGCATTCCTCACCTACAGAGTTCTTAGCTCTGGTGAACTTgtaagatcct ... cattttacagGAAGCTCGTGTAAGATTTTCTGGATTTGGCAATGAGGAGGACGAGTGGGTG
ctattagtacttcactgggtttgaacctgcaaccaagtcctgttacattttacagGAAGCTCGTGTAAGATTTTCTGGATTTGGCAATGAGGAGGACGAGTGGGTGAATGTCAAAAAGGGAATACGAAAGCGGTCGATTCCTCTAGAGCCTTCAG
ttacatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agagccttctttccatcctttgatgtcatggatggttttgaaatcctattagtacttcactgggtttgaacctgcaaccaagtcctgttacattttacagGAAGCTCGTGTAAGATTTTCTGGATTTGGCAATGAGGAGGACGAGTGGGTGAATGTCAAAAAGGGAATACGAAAGCGGTCGATTCCTCTAGAGCCTTCAG
- agccttc
- - - - - - ccatcct
- - - - - - - - - - tgatgtc
- - - - - - - - - - - - - - tggatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - -acttcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctgtta