Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttttcgatcctcattctctcatcccacatgtaaatttgtctactaccctgagatctgtattgaaatttttgtgtttgttgttttcagTTGGTAGCAGCAAGCAAGAAAAGGCACCACTTGACTCTGCATTGAAATGAAGAAGGGGATTTTTCTATGAAGTATGAAGGGGATTTTGCTTAGTGTATTT

Basic information

species Vitis vinifera
transcript Vv09s0002g03410.t01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110422054|gb|EC988366.1|EC988366
EST:     GGTGAAGAGGTTGCGCGTGTTGAAGAGCTCTGAACTTTCTGCTCTATGCC                         TTGGTAGCAGCAAGCAAGAAAAGGCACCACTTGACTCTGCATTGAAATGAA
genomic: GGTGAAGAGGTTGCGCGTGTTGAAGAGCTCTGAACTTTCTGCTCTATGCCgtgagttttt ... ttgttttcagTTGGTAGCAGCAAGCAAGAAAAGGCACCACTTGACTCTGCATTGAAATGAA
EST: gi|110418706|gb|EC984872.1|EC984872
EST:     GGTGAAGAGGTTGCGCGTGTTGAAGAGCTCTGAACTTTCTGCTCTATGCC                         TTGGTAGCAGCAAGCAAGAAAAGGCACCACTTGACTCTGCATTGAAATGAA
genomic: GGTGAAGAGGTTGCGCGTGTTGAAGAGCTCTGAACTTTCTGCTCTATGCCgtgagttttt ... ttgttttcagTTGGTAGCAGCAAGCAAGAAAAGGCACCACTTGACTCTGCATTGAAATGAA
EST: gi|30251350|gb|CB969083.1|CB969083
EST:     GGTGAAGAGGTTGCGCGTGTTGAAGAGCTCTGAACTTTCTGCTCTATGCC                         TTGGTAGCAGCAAGCAAGAAAAGGCCCCCCTTGACTCTGCATTGAAATGAA
genomic: GGTGAAGAGGTTGCGCGTGTTGAAGAGCTCTGAACTTTCTGCTCTATGCCgtgagttttt ... ttgttttcagTTGGTAGCAGCAAGCAAGAAAAGGCACCACTTGACTCTGCATTGAAATGAA
EST: gi|30251355|gb|CB969088.1|CB969088
EST:     GGTGAAGAGGTTGCGCGTGTTGAAGAGCTCTGAACTTTCTGCTCTATGCC                         TTGGTAGCAGCAAGCAAGAAAAGGCACCCCTTGACTCTGCATTGAAATGAA
genomic: GGTGAAGAGGTTGCGCGTGTTGAAGAGCTCTGAACTTTCTGCTCTATGCCgtgagttttt ... ttgttttcagTTGGTAGCAGCAAGCAAGAAAAGGCACCACTTGACTCTGCATTGAAATGAA
EST: gi|161721537|gb|FC069747.1|FC069747
EST:     GGTGAAGAGGTTGCGCGTGTTGAAGAGCTCTGAACTTTCTGCTCTATGCC                         TTGGTAGCAGCAAGCAAGAAAAGGCACCACTTGACTCTGCATTGAAATGAA
genomic: GGTGAAGAGGTTGCGCGTGTTGAAGAGCTCTGAACTTTCTGCTCTATGCCgtgagttttt ... ttgttttcagTTGGTAGCAGCAAGCAAGAAAAGGCACCACTTGACTCTGCATTGAAATGAA
EST: gi|110386232|gb|EC950813.1|EC950813
EST:     GGTGAAGAGGTTGCGCGTGTTGAAGAGCTCTGAACTTTCTGCTCTATGCC                         TTGGTAGCAGCAAGCAAGAAAAGGCACCACTTGACTCTGCATTGAAATGAA
genomic: GGTGAAGAGGTTGCGCGTGTTGAAGAGCTCTGAACTTTCTGCTCTATGCCgtgagttttt ... ttgttttcagTTGGTAGCAGCAAGCAAGAAAAGGCACCACTTGACTCTGCATTGAAATGAA
EST: gi|156736126|gb|EV240247.1|EV240247
EST:     GTGAAGAGGTTGCGCGTGTTGAAGAGCTCTGAAACTT-CTGCTCTATGCC                         TTGGTAGCAGCAAGCAAGAAAAGGCACCACTTGACTCTGCATTGGAATGAA
genomic: GTGAAGAGGTTGCGCGTGTTGAAGAGCTCTGAA-CTTTCTGCTCTATGCCgtgagttttt ... ttgttttcagTTGGTAGCAGCAAGCAAGAAAAGGCACCACTTGACTCTGCATTGAAATGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttgtctactaccctgagatctgtattgaaatttttgtgtttgttgttttcagTTGGTAGCAGCAAGCAAGAAAAGGCACCACTTGACTCTGCATTGAAATGAAGAAGGGGATTTTTCTATGAAGTATGAAGGGGATTTTGCTTAGTGTATTT
                                             ttgttttc  CT-rich tract
                       tgtattgaaattttt  TA-rich tract