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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctgcagttgattacaggactacctttttatctttcagaggttttcagtctgttagactgatttgttttcttttcttatgcagGGCTTGTGGGGCTCTCTCTTTCTTATGCTCTGGCACTGACTGGTACACAAGTCTTCTTCTCTCGATGGTATTGTAACTTATCAAATTATGTTGTTTCAGT

Basic information

species Vitis vinifera
transcript Vv09s0002g02440.t01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110694968|gb|EE072449.1|EE072449
EST:     CACTGCTGCTCTTCTTCTTGTTCTACTTCCGAAGGGATATGTAGCTCCAG                         GGCTTGTGGGGCTCTCTCTTTCTTATGCTCTGGCACTGACTGGTACACAAG
genomic: CACTGCTGCTCTTCTTCTTGTTCTACTTCCGAAGGGATATGTAGCTCCAGgtatctgcag ... tcttatgcagGGCTTGTGGGGCTCTCTCTTTCTTATGCTCTGGCACTGACTGGTACACAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatctttcagaggttttcagtctgttagactgatttgttttcttttcttatgcagGGCTTGTGGGGCTCTCTCTTTCTTATGCTCTGGCACTGACTGGTACACAAGTCTTCTTCTCTCGATGGTATTGTAACTTATCAAATTATGTTGTTTCAGT
                           gactgat  putative branch site (score: 3)
                                 tttgttttcttttctt  CT-rich tract
                                atttgttttctttt  TA-rich tract