Sequence
atgc intronic sequence ATGC exonic sequencegtagataatgatttcttactttacattccttggtctctcttcttcttcttcactaatacaaagcaaaagtccgattacattgttttccttttgactaaaagGGGTATTATTTAGCCTCTGCAAGGGAGCTAATAAGGATCAATGGTACAACAAAAGCTCCTGTAATGAATTATGCAGCCGAGTCATCCCTTGGAGTGGTCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g02430.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA08G20770.1 (Glycine max), 3'ss of exon 6
gtagataatgatttcttactttacattccttggtctctcttcttcttcttcactaata-caaagcaaaagtccgattacattgttttccttttgactaaaagGGGTATTATTTAGCCTCTGCAAGGGAGCTAATAAGGATCAATGGTACAACAAAAGCTCCTGTAATGAATTATGCAGCCGAGTCATCCCTTGGAGTGGTCA
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----------gtttaccaactttcatatttt----tctagttcccgtcccagcttagatcacagctagaattttctta-atctttttttttcctcctaaaagGGATATTATCAAGCCTCAGCAAGGGAATTAATGAGGATCAATGGAACCACAAAAGCTCCTGTCATGAATTTTGCAGCCGAGACATCACTTGGTGTGGTTA
upper sequence: Vv09s0002g02430.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA07G01390.1 (Glycine max), 3'ss of exon 6
gtagataatg-atttcttactttacattccttggtctctcttcttcttcttcactaatacaaagcaaaagtccgattacattgttttccttttgactaaaagGGGTATTATTTAGCCTCTGCAAGGGAGCTAATAAGGATCAATGGTACAACAAAAGCTCCTGTAATGAATTATGCAGCCGAGTCATCCCTTGGAGTGGTCA
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---gtttacgcacttcctagttt---ttcttggttttctattttttgtccttgct----tggttcataaagctaacaaacttttaatcatcttccttgaaagGGATATTATCAAGCCTCAGCAAGGGAATTGATAAGGATTAATGGAACCACAAAAGCTCCTGTCATGAATTTTGCAGCTGAGACATCACTTGGATTGGTTA
upper sequence: Vv09s0002g02430.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA07G01380.1 (Glycine max), 3'ss of exon 13
gtagataatgatttcttactttacattccttggtctctcttcttcttcttcactaatacaaagcaaaagtccgattacattgttttccttttgactaaaagGGGTATTATTTAGCCTCTGCAAGGGAGCTAATAAGGATCAATGGTACAACAAAAGCTCCTGTAATGAATTATGCAGCCGAGTCATCCCTTGGAGTGGTCA
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---------gtttaccaactttcttatttttctgtttcccgcccctgcttagat--cacagagctagaactttcttaatctttttttcccc---ctaaaagGGATATTATCAAGCCTCATCAAGGGAATTAATGCGGATCAATGGAACCACAAAAGCTCCTGTCATGAATTTTGCAGCTGAGACATCACTTGGTGTGGTTA
upper sequence: Vv09s0002g02430.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA08G20360.1 (Glycine max), 3'ss of exon 6
-----------------------------------------------------------------------------------gtagataatgatttcttactttacattccttggtctctcttcttcttcttcactaatacaaagcaaaagtccgattacattgttttccttttga---ctaaaagGGGTATTATTTAGCCTCTGCAAGGGAGCTAATAAGGATCAATGGTACAACAAAAGCTCCTGTAATGAATTATGCAGCCGAGTCATCCCTTGGAGTGGTCA
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gtttaatttctttactttctaatttttatttgttagaatttatttccttataaaaatatttatacagaaaaccttaataaacagtaaata-taattgttaactttccattc-tcggttcctaattagatcatggatcta-gcaacttcctagcctttgtattttattttgttttaaaattttaatagGGATATTATCAAGCCTCGGCGAGGGAATTGATAAGGATCAATGGAACCACAAAAGCTCCAGTCATGAATTTTGCTGCTGAGACATCACTTGGGGTGGTTA
upper sequence: Vv09s0002g02430.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT3G21250.2 (Arabidopsis thaliana), 3'ss of exon 6
gtagataatgatttcttactttacattccttggtctctcttcttcttc---ttcactaatacaaagcaaaagtccg-atta-cattgttttccttttgactaaaagGGGTATTATTTAGCCTCTGCAAGGGAGCTAATAAGGATCAATGGTACAACAAAAGCTCCTGTAATGAATTATGCAGCCGAGTCATCCCTTGGAGTGGTCA
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--------------------gtacatgattcgattctacttctgtttttagttgttttatgcagcaaataagtctgtattaacatccgcttcttctttgaaaaaagGATTACTATTTAGCCTCTGCAAGGGAGCTGATTAGGATCAATGGAACAACCAAAGCTCCAGTGATGAATTATGCTGCAGAAACCTCACTTGGGGTGGTGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcttcactaatacaaagcaaaagtccgattacattgttttccttttgactaaaagGGGTATTATTTAGCCTCTGCAAGGGAGCTAATAAGGATCAATGGTACAACAAAAGCTCCTGTAATGAATTATGCAGCCGAGTCATCCCTTGGAGTGGTCA
cattgttttcctttt CT-rich tract
taatacaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtagataatgatttcttactttacattccttggtctctcttcttcttcttcactaatacaaagcaaaagtccgattacattgttttccttttgactaaaagGGGTATTATTTAGCCTCTGCAAGGGAGCTAATAAGGATCAATGGTACAACAAAAGCTCCTGTAATGAATTATGCAGCCGAGTCATCCCTTGGAGTGGTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG