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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctctttatgctgacaattattctgaatctcaagagcttcagttgtctaactttatgatgttatatccttacagGTTATGATGCGATTGTTTAGTCCACGAAAAACAACTTTGATGTTTGTTATTCGTGATAAAACAAGG

Basic information

species Vitis vinifera
transcript Vv09s0002g02200.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g02200.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: LOC_Os01g39310.3 (Oryza sativa), 3'ss of exon 6
----------------------------gtatctctttatgctgacaattattctgaatctcaagagcttcagttgtctaactttatgatgttatatccttacagGTTATGATGCGATTGTTTAGTCCACGAAAAACAACTTTGATGTTTGTTATTCGTGATAAAACAAGG
                             ||| |  ||    |    ||| |||  | |      || | |  |  | | | | | |  |  |  | |   | ||||||||||| ||||||| |||||||| ||||| || ||| |||||||||||||||||||| ||| |
gtcagtttgttagtgctacaatgtgggcttattttctttgattcctgattcttc--agtggtggaagatactataatatcattgtgtctttgtcaacctgaatagGTTATGATGAGATTGTTCAGTCCACGTAAAACGACATTGTTGTTTGTTATTCGTGATAAATCAAAG

upper sequence: Vv09s0002g02200.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA08G20610.1 (Glycine max), 3'ss of exon 6
-----------gtatctctttatgctgacaatt---attctgaatctcaagagct--------tcagttgtctaactttatgatgttatatccttacagGTTATGATGCGATTGTTTAGTCCACGAAAAACAACTTTGATGTTTGTTATTCGTGATAAAACAAGG
               || || |     | || |   ||  |||||||  | |  |        ||| || | |||||  |   |    | | ||| ||||| |||||| ||||||||||||||||||||||||| ||| ||||||| || |||||||||||||||
gtatgtgttgttggcctattgactacaagaacttgaatcttgaatcttgaaacttgtcaattgtcatttatttaactgcacactaaattttactttcagGTCATGATGAGATTGTTTAGTCCACGAAAAACAACATTGCTGTTTGTCATACGTGATAAAACAAGG

upper sequence: Vv09s0002g02200.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA07G01230.1 (Glycine max), 3'ss of exon 6
-----------gtatctcttta-tgctgacaattattctgaatctcaagagct-tcagttg---tctaactttatg---atgttatatccttacagGTTATGATGCGATTGTTTAGTCCACGAAAAACAACTTTGATGTTTGTTATTCGTGATAAAACAAGG
               || || | | |   |||||||  |||||||  | |  | ||  |||   | ||  |  |||   ||    | | ||| ||||| |||||| ||||||||||||||||||||||||| ||| ||||||| || || ||||||||||||
gtatgtgttgtcagcctattgactacaagcaattatcttgaatcttgaaacttgtcgattgacatttatttaaatgcacattcattttactttcagGTCATGATGAGATTGTTTAGTCCACGAAAAACAACATTGTTGTTTGTCATACGCGATAAAACAAGG

upper sequence: Vv09s0002g02200.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA15G02780.1 (Glycine max), 3'ss of exon 6
----------gtatctcttta--tgctgacaattattctgaatctcaagagct-tcagttgtctaactttatgatgttatatccttacagGTTATGATGCGATTGTTTAGTCCACGAAAAACAACTTTGATGTTTGTTATTCGTGATAAAACAAGG
           || |   ||   | |   |||   ||   ||||| || || | | | || ||||| |  ||| |  ||| | ||| ||||| |||||| |||||||||||||||| ||||||||  || ||||||| || |||||||| |||| |
gtatcattcaataacctattgactacaagcaacagtttccaatctaaaaagttgttatttatctaattgcatgcttgtatttgctttcagGTCATGATGAGATTGTTTAGTCCACGCAAAACAACAATGTTGTTTGTCATACGTGATAAGACAAAG

upper sequence: Vv09s0002g02200.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA13G42650.1 (Glycine max), 3'ss of exon 7
-----------gtatctctttat-gctgacaattattctgaatctcaagagctt-cagttgtctaactttatgatgttatatccttacagGTTATGATGCGATTGTTTAGTCCACGAAAAACAACTTTGATGTTTGTTATTCGTGATAAAACAAGG
            || || || ||  |   ||||  ||   ||||| || || |   | || ||||| |  ||| |  ||| | ||| ||||| |||||| |||||||||||||||| ||||||||  || ||||||| || |||||||| |||| |
gtatcattcaactacctattgattacaagcaatagtttccaatctaaaaagttggtatttatctaattgcatgcttgtatttgctttcagGTCATGATGAGATTGTTTAGTCCACGCAAAACAACAATGTTGTTTGTCATACGTGATAAGACAAAG

upper sequence: Vv09s0002g02200.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT3G13870.2 (Arabidopsis thaliana), 3'ss of exon 6
----------gtatctctttatgctgacaattattctgaatctcaagagcttcag-ttgtctaactttatgatgttatatccttacagGTTATGATGCGATTGTTTAGTCCACGAAAAACAACTTTGATGTTTGTTATTCGTGATAAAACAAGG
          |||| |  ||||   ||  | |  |||   |  | |   ||  ||  ||| |   |||       || || |   |||||||||||||| ||||||||||| || || ||||||||||||||||||||  | ||||||||| ||
gtatgtgcctgtatgttcttatcaggatgagttatctctgttccgaagtctcaagactgtttgctttt------ctacatgcaatcagGTTATGATGCGGTTGTTTAGTCCGCGGAAGACAACTTTGATGTTTGTTATAAGAGATAAAACACGG

upper sequence: Vv09s0002g02200.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT1G72960.1 (Arabidopsis thaliana), 3'ss of exon 6
-----------gtatctctttatgctgacaattattc-tgaatctcaagagcttcagtt--------gtctaactttatgatgttatatccttacagGTTATGATGCGATTGTTTAGTCCACGAAAAACAACTTTGATGTTTGTTATTCGTGATAAAACAAGG
           |   |||   | | | | || | ||  || ||| ||| |   |    |        || | | | | ||  |||   |  |  ||||| ||||||||||||||||||||||| ||||||||  || ||||||| || || ||||||||  ||
gtattttttttgatgctcaggaagttaaaaactctttgtgtatcacaaaaatattttcttaccctaagtttgaatctttggagttgggtt-tggcagGTGATGATGCGATTGTTTAGTCCACGTAAAACAACAATGCTGTTTGTAATACGAGATAAAACCCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attctgaatctcaagagcttcagttgtctaactttatgatgttatatccttacagGTTATGATGCGATTGTTTAGTCCACGAAAAACAACTTTGATGTTTGTTATTCGTGATAAAACAAGG
                         gtctaac  putative branch site (score: 2)
                                            tatcctt  putative PPT
                                tttatgatgttatat  TA-rich tract