Sequence
atgc intronic sequence ATGC exonic sequence...ttgagagttattctgcgttgccatgatctagaacttgtttttttggtgaatgaatatatcttttctgtgtttgaaaacctgaacagtggtgtcttttcagATTCCTCTTGCTCATTACCTACCAACATGGAGAGGAAATGTTATAGATGCAGAGATAGAAATGAATCCATCGCGTATCGTCGGTATGTCTCTGTCTGTCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g00680.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA07G04830.1 (Glycine max), 3'ss of exon 5
------ttgagagttattctgcgttgccatgatctagaacttgtttttttggtgaatgaatatatc---ttttctgtgtttgaaaacctgaacagtggtgtcttttcagATTCCTCTTGCTCATTACCTACCAACATGGAGAGGAAATGTTATAGATGCAGAGATAGAAATGAATCCATCGCGTATCGTCGGTATGTCTCTGTCTGTCA
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agtgggataaggtttttgctgc--tgctgttgtttgtacctagttgatttc-tatatcaacatattgggtgtcatatgcttattaattt---cattgat---tggccagATTCCTCTAGCTCGATATTTACCTACTTGGAGAGGGAATGTTATAGATGCACAAATCGAAATGAATCCATCCCGTGTTTTGGGCATGTCTCTATCTGTCA
upper sequence: Vv09s0002g00680.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA16G01410.2 (Glycine max), 3'ss of exon 5
-ttgagagttattctgcgttgccatgatc--tagaacttgtttttttggtgaatgaatatatc---ttttctgtgtttgaaaacctgaacagtggtgtcttttcagATTCCTCTTGCTCATTACCTACCAACATGGAGAGGAAATGTTATAGATGCAGAGATAGAAATGAATCCATCGCGTATCGTCGGTATGTCTCTGTCTGTCA
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agtaggataaggcttttgatgctattgttgtttgtacctagttgatttctatatcaacatattgggtgtcatatgcttatgaattt---cattgat---tggccagATTCCTCTAGCTCGATATTTACCTACTTGGAGAGGGAACGTTATAGATGCACAAATCGAAATGAATCCATCCCGTGTTTTAGGCATGTCTCTATCTGTCA
upper sequence: Vv09s0002g00680.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT1G17350.2 (Arabidopsis thaliana), 3'ss of exon 7
----------------------------------------------------------ttga-gagttattctgcgttgc-------catgatctaga--acttgtttttttggtgaatgaat----atatcttttctgtgtttgaaaacctg--aacag--tggtgtct----tttcagATTCCTCTTGCTCATTACCTACCAACATGGAGAGGAAATGTTATAGATGCAGAGATAGAAATGAATCCATCGCGTATCGTCGGTATGTCTCTGTCTGTCA
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gttaccaacaaaaagcttagagcattatacacatccttttttgttttttaactctctttagacaaaaccttcggctttagatgaaaacataaccaaaaagacagatctccattatgaatcaacttgaatatttcacttgtcgtctaaggcctattaataacctgatgttgaatatatcagATTCCTCTAGCTCGATACTTGCCAACATGGAGAGGAAATGTTATAGATGTGGAAATGGAGATGAATCCAGGTCGTGTTCTAGGTATGTCACTGTCCGTAA
upper sequence: Vv09s0002g00680.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT1G17350.1 (Arabidopsis thaliana), 3'ss of exon 7
ttgagagttattctgcgttgccatgatctagaa--cttgtttttttggtgaatgaat----atatcttttctgtgtttgaaaacctg--aacag--tggtgtc----ttttcagATTCCTCTTGCTCATTACCTACCAACATGGAGAGGAAATGTTATAGATGCAGAGATAGAAATGAATCCATCGCGTATCGTCGGTATGTCTCTGTCTGTCA
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--------------atgaaaacataaccaaaaagacagatctccattatgaatcaacttgaatatttcacttgtcgtctaaggcctattaataacctgatgttgaatatatcagATTCCTCTAGCTCGATACTTGCCAACATGGAGAGGAAATGTTATAGATGTGGAAATGGAGATGAATCCAGGTCGTGTTCTAGGTATGTCACTGTCCGTAA
upper sequence: Vv09s0002g00680.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT1G72420.1 (Arabidopsis thaliana), 3'ss of exon 7
ttgagagttattct-gcgttgccatgatctagaacttgtttttttggtgaatgaatatatcttttctgtgtttgaaaacctgaacagtggtgtcttttcagATTCCTCTTGCTCATTACCTACCAACATGGAGAGGAAATGTTATAGATGCAGAGATAGAAATGAATCCATCGCGTATCGTCGGTATGTCTCTGTCTGTCA
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------gcaagtctcgtacttctacaaagca--actagtgtta-----aaaggggttttgctgtaacttgttaactcaagtgtgacatctttcttcttcagGTTCCTCTTACTCGCTACTTACCAACATGGAAAGGAAACGTGATAGATGCAGAAATGGAGATGAATCCAGGTCATGTTGTTGGTATGTCTCTATCCGTTAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|27582879|gb|CB005574.1|CB005574EST: CATGGCAAGCATTTGTTTTTGTACCAAAAGACAACTGGTATATTACAAAG ATTCCTCTTGCTCATTACCTACCAACATGGAGAGGAAATGTTATAGATGCA
genomic: CATGGCAAGCATTTGTTTTTGTACCAAAAGACAACTGGTATATTACAAAGgcaagttctg ... gtcttttcagATTCCTCTTGCTCATTACCTACCAACATGGAGAGGAAATGTTATAGATGCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtgaatgaatatatcttttctgtgtttgaaaacctgaacagtggtgtcttttcagATTCCTCTTGCTCATTACCTACCAACATGGAGAGGAAATGTTATAGATGCAGAGATAGAAATGAATCCATCGCGTATCGTCGGTATGTCTCTGTCTGTCA
tgtcttttc CT-rich tract
tgaatatatctttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttgagagttattctgcgttgccatgatctagaacttgtttttttggtgaatgaatatatcttttctgtgtttgaaaacctgaacagtggtgtcttttcagATTCCTCTTGCTCATTACCTACCAACATGGAGAGGAAATGTTATAGATGCAGAGATAGAAATGAATCCATCGCGTATCGTCGGTATGTCTCTGTCTGTCA
- - - - -attctgc
- - - - - - - - - - ccatgat
- - - - - - - - - - - - - - - - - - - - - - -gtgaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaacc