1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tcatcacttacagatacattatccatgttcaactggtgtagaatatagattgggtagtatgtccaccatagaattcaaattaacttgctgtaaaatgcagAGGGAAGGCCAGACAGGACAGGACTACGACTATCCAATGAAATGGCAAAGCTTGATGTTCCTGTGAAGCTCTTAATAGACTCAGCAGTGGCATATACTAT
species | Vitis vinifera |
transcript | Vv09s0002g00390.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCTGAAGACAGCAGCACAGAATAAGAAACTCTTTCGAGTTTTCTGCACAG AGGGAAGGCCGGACAGGACAGGACTACGACTATCCAATGAAATGGCAAAGCEST: gi|110375926|gb|EC940956.1|EC940956
genomic: TCTGAAGACAGCAGCACAGAATAAGAAACTCTTTCGAGTTTTCTGCACAGgtttctttct ... taaaatgcagAGGGAAGGCCAGACAGGACAGGACTACGACTATCCAATGAAATGGCAAAGC
EST: TCTGAAGACAGCAGCACAGAATAAGAAACTCTTTCGAGTTTTCTGCACAG AGGGAAGGCCGGACAGGACAGGACTACGACTATCCAATGAAATGGCAAAGCEST: gi|351044484|gb|FQ443015.1|FQ443015
genomic: TCTGAAGACAGCAGCACAGAATAAGAAACTCTTTCGAGTTTTCTGCACAGgtttctttct ... taaaatgcagAGGGAAGGCCAGACAGGACAGGACTACGACTATCCAATGAAATGGCAAAGC
EST: TCTGAAGACAGCAGCACAGAATAAGAAACTCTTTCGAGTTTTCTGCACAG AGGGAAGGCCAGACAGGACAGGACTACGACTATCCAATGAAATGGCCAAGCEST: gi|349807839|gb|FQ402230.1|FQ402230
genomic: TCTGAAGACAGCAGCACAGAATAAGAAACTCTTTCGAGTTTTCTGCACAGgtttctttct ... taaaatgcagAGGGAAGGCCAGACAGGACAGGACTACGACTATCCAATGAAATGGCAAAGC
EST: TCTGAAGACAGCAGCACAGAATAAGAAACTCTTTCGAGTTTTCTGCACAG AGGGAAGGCCAGACAGGACAGGACTACGACTATCCAATGAAATGGCAAAGCEST: gi|349817476|gb|FQ407266.1|FQ407266
genomic: TCTGAAGACAGCAGCACAGAATAAGAAACTCTTTCGAGTTTTCTGCACAGgtttctttct ... taaaatgcagAGGGAAGGCCAGACAGGACAGGACTACGACTATCCAATGAAATGGCAAAGC
EST: TCTGAAGACAGCAGCGCAGAATAAGAAACTCTTTCGAGTTTTCTGCACAG AGGGAAGGCCAGACAGGACAGGACTACGACTATCCAATGAAATGGCAAAGCEST: gi|351012185|gb|FQ426907.1|FQ426907
genomic: TCTGAAGACAGCAGCACAGAATAAGAAACTCTTTCGAGTTTTCTGCACAGgtttctttct ... taaaatgcagAGGGAAGGCCAGACAGGACAGGACTACGACTATCCAATGAAATGGCAAAGC
EST: TCTGAAGACAGCAGCGCAGAATAAGAAACTCTTTCGAGTTTTCTGCACAG AGGGAAGGCCAGACAGGACAGGACTACGACTATCCAATGAAATGGCAAAGCEST: gi|349814725|gb|FQ409948.1|FQ409948
genomic: TCTGAAGACAGCAGCACAGAATAAGAAACTCTTTCGAGTTTTCTGCACAGgtttctttct ... taaaatgcagAGGGAAGGCCAGACAGGACAGGACTACGACTATCCAATGAAATGGCAAAGC
EST: TCTGAAGACAGCAGCACAGAATAAGAAACTCTTTCGAGTTTTCTGCACAG AGGGAAGGCCAGACAGGACAGGACTACGACTATCCAATGAAATGGCAAAGCEST: gi|110372726|gb|EC936913.1|EC936913
genomic: TCTGAAGACAGCAGCACAGAATAAGAAACTCTTTCGAGTTTTCTGCACAGgtttctttct ... taaaatgcagAGGGAAGGCCAGACAGGACAGGACTACGACTATCCAATGAAATGGCAAAGC
EST: TCTGAAGACAGCAGCACAGAATAAGAAACTCTTTCGAGTTTTCTGCACAG AGGGAAGGCCGGACAGGACAGGACTACGACTATCCAATGAAATGGCAAAGCEST: gi|351024997|gb|FQ433414.1|FQ433414
genomic: TCTGAAGACAGCAGCACAGAATAAGAAACTCTTTCGAGTTTTCTGCACAGgtttctttct ... taaaatgcagAGGGAAGGCCAGACAGGACAGGACTACGACTATCCAATGAAATGGCAAAGC
EST: TCTGAAGACAGCAGCACAGAATAAGAAACTCCTTCGAGTTTTCTGCACAG AGGGAAGGCCAGACAGGACAGGACTACGACTATCCAATGAAATGGCAAAGCEST: gi|349822671|gb|FQ412935.1|FQ412935
genomic: TCTGAAGACAGCAGCACAGAATAAGAAACTCTTTCGAGTTTTCTGCACAGgtttctttct ... taaaatgcagAGGGAAGGCCAGACAGGACAGGACTACGACTATCCAATGAAATGGCAAAGC
EST: TCTGAAGACAGCAGCACAGAATAAGAAACTCTTTCGAGTTTTCTGCACAG AGGGAAGGCCAGACAGGACAGGACTACGACTATCCAATGAAATGGCAAAGCEST: gi|351053555|gb|FQ459302.1|FQ459302
genomic: TCTGAAGACAGCAGCACAGAATAAGAAACTCTTTCGAGTTTTCTGCACAGgtttctttct ... taaaatgcagAGGGAAGGCCAGACAGGACAGGACTACGACTATCCAATGAAATGGCAAAGC
EST: TCTGAAGACAGCAGCACAGAATAAGAAACTCTTTCGAGTTTTCTGCACAG AGGGAAGGCCAGACAGGACAGGACTACGACTATCCAATGAAATGGACAA-GEST: gi|351049282|gb|FQ429025.1|FQ429025
genomic: TCTGAAGACAGCAGCACAGAATAAGAAACTCTTTCGAGTTTTCTGCACAGgtttctttct ... taaaatgcagAGGGAAGGCCAGACAGGACAGGACTACGACTATCCAATGAAATGG-CAAAG
EST: TCTGAAGACAGCAGCACAGAATAAGAAACTCTTTCGAGTTTTCTGCACAG AGGGAAGGCCAGACAGGACAGGACTACGACTATCCCATGAAATGGCAAAGCEST: gi|110406357|gb|EC971927.1|EC971927
genomic: TCTGAAGACAGCAGCACAGAATAAGAAACTCTTTCGAGTTTTCTGCACAGgtttctttct ... taaaatgcagAGGGAAGGCCAGACAGGACAGGACTACGACTATCCAATGAAATGGCAAAGC
EST: TCTGAAGACAGCAGCACAGAATAAGAAACTCTTTCGAGTTTTCTGCACAG AGGGAAGGCCAGACAGGACAGGACTACGACTATCCAATGAAATGGCAAAGCEST: gi|349821346|gb|FQ404478.1|FQ404478
genomic: TCTGAAGACAGCAGCACAGAATAAGAAACTCTTTCGAGTTTTCTGCACAGgtttctttct ... taaaatgcagAGGGAAGGCCAGACAGGACAGGACTACGACTATCCAATGAAATGGCAAAGC
EST: TCTGAAGACAGCAGCACAGAATAAGAAACTCTTTCGAGTTTTCTGCACAG AGGGAAGGCCAGACAGGACAGGACTACGACTATCCAATGAAATGGCAAAGCEST: gi|351048077|gb|FQ441249.1|FQ441249
genomic: TCTGAAGACAGCAGCACAGAATAAGAAACTCTTTCGAGTTTTCTGCACAGgtttctttct ... taaaatgcagAGGGAAGGCCAGACAGGACAGGACTACGACTATCCAATGAAATGGCAAAGC
EST: TCTGAAGACAGCAGCACAGAATAAGAAACTCTTTCGAGTTTTCTGCACAG AGGGAAGGCCAGACAGGACAGGACTACGACTATCCAATGAAATGGCAAAGCEST: gi|351031133|gb|FQ444960.1|FQ444960
genomic: TCTGAAGACAGCAGCACAGAATAAGAAACTCTTTCGAGTTTTCTGCACAGgtttctttct ... taaaatgcagAGGGAAGGCCAGACAGGACAGGACTACGACTATCCAATGAAATGGCAAAGC
EST: TCTGAAGACAGCAGCACAGAATAAGAAACTCTTTCGAGTTTTCTGCACAG AGGGAAGGCCAGACAGGACAGGACTACGACTATCCCAATGAA-TGGCAAAGEST: gi|351056004|gb|FQ453465.1|FQ453465
genomic: TCTGAAGACAGCAGCACAGAATAAGAAACTCTTTCGAGTTTTCTGCACAGgtttctttct ... taaaatgcagAGGGAAGGCCAGACAGGACAGGACTACGACTATCC-AATGAAATGGCAAAG
EST: TCTGAAGACAGCAGCACAGAATAAGAAACTCTTTCGAGTTTTCTGCACAG AGGGAAGGCCAGACAGGACAGGACTACGACTATCCAATGAAATGGCAAAGCEST: gi|352790509|gb|FQ478149.1|FQ478149
genomic: TCTGAAGACAGCAGCACAGAATAAGAAACTCTTTCGAGTTTTCTGCACAGgtttctttct ... taaaatgcagAGGGAAGGCCAGACAGGACAGGACTACGACTATCCAATGAAATGGCAAAGC
EST: TCTGAAGACAGCAGCACAGAATAAGAAACTCTTCCGAGTTTTCTGCACAG AGGGAAGGCCAGACAGGACAGGACTACGACTATCCAATGAAATGGCAAAGCEST: gi|349822083|gb|FQ408412.1|FQ408412
genomic: TCTGAAGACAGCAGCACAGAATAAGAAACTCTTTCGAGTTTTCTGCACAGgtttctttct ... taaaatgcagAGGGAAGGCCAGACAGGACAGGACTACGACTATCCAATGAAATGGCAAAGC
EST: TCTGAAGACAGCAGCACAGAATAAGAAACTCTTTCGAGTTTTCTGCACAG AGGGAAGGCCAGACAGGACAGGACTACGACTATCCCATGAAATGGCAAAGCEST: gi|110392389|gb|EC957773.1|EC957773
genomic: TCTGAAGACAGCAGCACAGAATAAGAAACTCTTTCGAGTTTTCTGCACAGgtttctttct ... taaaatgcagAGGGAAGGCCAGACAGGACAGGACTACGACTATCCAATGAAATGGCAAAGC
EST: TCTGAAGACAGCAGCACAGAATAAGAAACTCTTTCGAGTTTTCTGCACAG AGGGAAGGCCGGACAGGACAGGACTACGACTATCCAATGAAATGGCAAAGC
genomic: TCTGAAGACAGCAGCACAGAATAAGAAACTCTTTCGAGTTTTCTGCACAGgtttctttct ... taaaatgcagAGGGAAGGCCAGACAGGACAGGACTACGACTATCCAATGAAATGGCAAAGC
tagattgggtagtatgtccaccatagaattcaaattaacttgctgtaaaatgcagAGGGAAGGCCAGACAGGACAGGACTACGACTATCCAATGAAATGGCAAAGCTTGATGTTCCTGTGAAGCTCTTAATAGACTCAGCAGTGGCATATACTAT
aattaac putative branch site (score: 2)
atagaattcaaattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatcacttacagatacattatccatgttcaactggtgtagaatatagattgggtagtatgtccaccatagaattcaaattaacttgctgtaaaatgcagAGGGAAGGCCAGACAGGACAGGACTACGACTATCCAATGAAATGGCAAAGCTTGATGTTCCTGTGAAGCTCTTAATAGACTCAGCAGTGGCATATACTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
-catcact
- - - - - -agataca
- - - - - - - - - - - ccatgtt
- - - - - - - - - - - - - - - - ctggtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tccacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaattaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgctg