Sequence
atgc intronic sequence ATGC exonic sequence...ggaaaaataagaagctgaacgactacttaatttttgtttttttggcaaattaaacgacattctatttttaacctttttgtatacttgcaatattttgcagATTCATCCTTTCAAACACAGTGTCCTAAATTTTGGGACTTCATAAAGAGGGCATGTACTAAATTGATGAAGGTTTTAGTTGCATTTCAGACCAGACATCC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0217g00060.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA07G18530.1 (Glycine max), 3'ss of exon 6
ggaaaaataagaagctg-aacgactacttaatttttgtttttttggcaaattaaacg---acattctatttttaacctttttgtatac------ttgcaatattttgcagATTCATCCTTTCAAACACAGTGTCCTAAATTTTGGGACTTCATAAAGAGGGCATGTACTAAATTGATGAAGGTTTTAGTTGCATTTCAGACCAGACATCC
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----------caatctacaatgtctagttctcatatagtgcaaagaaaaagaaaacataaatattattttttttccttttattcttacaagacattttggttgtttgcagATTCGTCTTTTCAAAAACAATATCCTAAATTTTGGGACTTTGTAAAGAGGGCATGTACCAAATTGATGAAAATTTTAGTTGCCTTTCAGGGCAGACATCC
upper sequence: Vv08s0217g00060.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA16G19490.1 (Glycine max), 3'ss of exon 7
ggaaaaataagaagctgaacgactacttaatttttgtttttttggcaaattaaacgacattctatttttaacctttttgtatacttgcaatattttgcagATTCATCCTTTCAAACACAGTGTCCTAAATTTTGGGACTTCATAAAGAGGGCATGTACTAAATTGATGAAGGTTTTAGTTGCATTTCAGACCAGACATCC-----------------------------------
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---------------aaaaagaaaacataaatattattttttt-------------------tccttttattcttacaagacattt-tggttgtttgcagattcgtcttttcaaaaacaatatcctaaattttagGACTTTGTAAAGAGGGCATGTACCAAATTGATGAAAATTTTAGTTGCCTTTCAGGGTAGACATCCATACTCATTTGGTGATAAATTTGTTCTTTCATCGG
upper sequence: Vv08s0217g00060.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA18G43420.1 (Glycine max), 3'ss of exon 6
ggaaaaataagaagctgaacgactacttaatttttgtttttttggcaaattaaacgacattctatttttaacctttttgtatacttgcaatat----------tttgcagATTCATCCTTTCAAACACAGTGTCCTAAATTTTGGGACTTCATAAAGAGGGCATGTACTAAATTGATGAAGGTTTTAGTTGCATTTCAGACCAGACATCC
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-------taaaatattatttatctactttctgtgccttttcttg-tgcataaaatgttacttttttttt--cttccttttattcttacaagacattttggttgtttgcagATTCGTCTTTTCAAAAGCAATATCCTAAATTTTGGGACTTTGTAAAGAGGGCATGTACCAAGTTGATGAAAATTTTAGTTGCCTTTCAGGGCAGACATCC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caaattaaacgacattctatttttaacctttttgtatacttgcaatattttgcagATTCATCCTTTCAAACACAGTGTCCTAAATTTTGGGACTTCATAAAGAGGGCATGTACTAAATTGATGAAGGTTTTAGTTGCATTTCAGACCAGACATCC
ttttaac putative branch site (score: 2)
tatttttaaccttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ggaaaaataagaagctgaacgactacttaatttttgtttttttggcaaattaaacgacattctatttttaacctttttgtatacttgcaatattttgcagATTCATCCTTTCAAACACAGTGTCCTAAATTTTGGGACTTCATAAAGAGGGCATGTACTAAATTGATGAAGGTTTTAGTTGCATTTCAGACCAGACATCC
- -aaaataa
- - - - - - - - - - - - - - - - - - - - - - - aaattaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gacattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgcaa