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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtctcctcccttatagtcattaattttttacgctacactttttatgatttatcttcattttttcaggtttataatgtaactccaatattttctatgtttggcagGACAATTTATCATCTGGCAAAGTCACCTTCCTATTGGCTGTCTATTTTTCTTATACTAACCATAGCATTGCTTCCTCGCTTTCTTTTTAAAGTTATACGT

Basic information

species Vitis vinifera
transcript Vv08s0058g01400.t01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|122688979|gb|EC928082.1|EC928082
EST:     TATGCTTGTCTGATTGCAGTGGATTCTATACCTATCTTCCCCAATTACGG                         GACAATTTATCATCTGGCAAAGTCACCTTCCTATTGGCTGTCTATTTTTCT
genomic: TATGCTTGTCTGATTGCAGTGGATTCTATACCTATCTTCCCCAATTACGGgttagtctcc ... tgtttggcagGACAATTTATCATCTGGCAAAGTCACCTTCCTATTGGCTGTCTATTTTTCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatcttcattttttcaggtttataatgtaactccaatattttctatgtttggcagGACAATTTATCATCTGGCAAAGTCACCTTCCTATTGGCTGTCTATTTTTCTTATACTAACCATAGCATTGCTTCCTCGCTTTCTTTTTAAAGTTATACGT
                        atgtaac  putative branch site (score: 3)
 ttttctat  putative PPT
 aatattttctatgttt  TA-rich tract