Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttttatgtcttttgcctgtttcctgttatgcgttctctgcatgtcttcgtttgggattcaatggttctctgttatggtgttcttctgatcaaataattttgttatagGATACATTTCGGGGCAGAGTGTGTGAATGTCCTATTGTGCAAGGCGTCAAGTTTACTGGTGATGGTTATACTAATTGTGAAG

Basic information

species Vitis vinifera
transcript Vv08s0058g01360.t01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33405593|gb|CF211220.1|CF211220
EST:     ATAATGGTGGATGCTGGCAGGATAAGGCTGCTAATATTACTGCATGCAAG                         GATACATTTCGGGGCAGAGTGTGTGAATGTCCTATCGTGCAAGGTGTCAAG
genomic: ATAATGGTGGATGCTGGCAGGATAAGGCTGCTAATATTACTGCATGCAAGgtacttttat ... tttgttatagGATACATTTCGGGGCAGAGTGTGTGAATGTCCTATTGTGCAAGGCGTCAAG
EST: gi|29781753|gb|CB346482.2|CB346482
EST:     ATAATGGTGGATGCTGGCAGGATAAGGCTGCTAATATTACTGCATGCAAG                         GATACATTTCGGGGCAGAGTGTGTGAATGTCCTATCGTGCAAGGCGTCAAG
genomic: ATAATGGTGGATGCTGGCAGGATAAGGCTGCTAATATTACTGCATGCAAGgtacttttat ... tttgttatagGATACATTTCGGGGCAGAGTGTGTGAATGTCCTATTGTGCAAGGCGTCAAG
EST: gi|110390350|gb|EC955254.1|EC955254
EST:     GCTAATATTACTGCATGCAAG                         GATACATTTCGGGGCAGAGTGTGTGAATGTCCTATCGTGCAAGGCGTCAAG
genomic: GCTAATATTACTGCATGCAAGgtacttttat ... tttgttatagGATACATTTCGGGGCAGAGTGTGTGAATGTCCTATTGTGCAAGGCGTCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gggattcaatggttctctgttatggtgttcttctgatcaaataattttgttatagGATACATTTCGGGGCAGAGTGTGTGAATGTCCTATTGTGCAAGGCGTCAAGTTTACTGGTGATGGTTATACTAATTGTGAAG
                              ttctgat  putative branch site (score: 3)
                                            ttttgtt  putative PPT
                                 tgatcaaataattttg  TA-rich tract