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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaaaaactagtgctgagccattatatgatctctgagctcagcatctgcatttgttaaaagggcaacctgaccttgcttttcttcgatatatcaaaatgagtttccttccttttcttaagatacaggttttcttttgtttatggttctttctttcttttcccaccttttggacagGATGGTGTTCCTGAATCTGATCGTTGTGTCGTGGGAGGCGTTCAAAACTCGCTCCAGTCTTATTTAGATTTGATGGCTTATGTCATGGGAATAATTATAT

Basic information

species Vitis vinifera
transcript Vv08s0058g00730.t01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34548317|gb|CF516549.1|CF516549
EST:     CCCGTCTGGGATTGTGGATGTTTGACTTGTCTGTCACCCAACAAATGCAG                         GATGGTGTTCCTGAATCTGATCGTTGTGTCGTGGGAGGCGTTCAAAACTCG
genomic: CCCGTCTGGGATTGTGGATGTTTGACTTGTCTGTCACCCAACAAATGCAGgtaaaaaaaa ... ttttggacagGATGGTGTTCCTGAATCTGATCGTTGTGTCGTGGGAGGCGTTCAAAACTCG
EST: gi|34547989|gb|CF516221.1|CF516221
EST:     CCCGTCTGGGATTGTGGATGTTTGACTTGTCTGTCACCCAAGATCTGCAG                         GATGGTGTTCCTGAATCTGATCGTTGTGTCGTGGGATGCGTTCAAAACTCG
genomic: CCCGTCTGGGATTGTGGATGTTTGACTTGTCTGTCACCCAACAAATGCAGgtaaaaaaaa ... ttttggacagGATGGTGTTCCTGAATCTGATCGTTGTGTCGTGGGAGGCGTTCAAAACTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atacaggttttcttttgtttatggttctttctttcttttcccaccttttggacagGATGGTGTTCCTGAATCTGATCGTTGTGTCGTGGGAGGCGTTCAAAACTCGCTCCAGTCTTATTTAGATTTGATGGCTTATGTCATGGGAATAATTATAT
       ttttcttttgtttatg  CT-rich tract
       ttttcttttgtttat  TA-rich tract