1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...aaaccagcatgtaactcaactaccaacatataagaatataaaagataatgagggttgcaaaccaaccagtcatggctaacatgagcggtaaactgaacagGTTGTGGAATGAAACTAAGGCGTGATGATCCTGCAGCCATGAAGGATTTTATTCAGAGTGTGCAGAATAGGGTGAATGAGTTAAAGGCTGCCTCTGGAGA
species | Vitis vinifera |
transcript | Vv08s0056g01280.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAAGCAGCTGCTGGAGATTGATGTGTCTACTATCTTGACAATTCTACAAT GTTGTGGAATGAAGCTAAGGCGTGATGATCCTGCAGCCATGAAGGATTTTAEST: gi|28968674|gb|CB347707.1|CB347707
genomic: CAAGCAGCTGCTGGAGATTGATGTGTCTACTATCTTGACAATTCTACAATgtaagcttgt ... aactgaacagGTTGTGGAATGAAACTAAGGCGTGATGATCCTGCAGCCATGAAGGATTTTA
EST: CAAGCAGCTGCTGGAGATTGATGTGTCTACTATCTTGACAATTCTACAAT GTTGTGGAATGAAGCTAAGGCGTGATGATCCTGCAGCCATGAAGGATTTTA
genomic: CAAGCAGCTGCTGGAGATTGATGTGTCTACTATCTTGACAATTCTACAATgtaagcttgt ... aactgaacagGTTGTGGAATGAAACTAAGGCGTGATGATCCTGCAGCCATGAAGGATTTTA
taatgagggttgcaaaccaaccagtcatggctaacatgagcggtaaactgaacagGTTGTGGAATGAAACTAAGGCGTGATGATCCTGCAGCCATGAAGGATTTTATTCAGAGTGTGCAGAATAGGGTGAATGAGTTAAAGGCTGCCTCTGGAGA
ggctaac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaccagcatgtaactcaactaccaacatataagaatataaaagataatgagggttgcaaaccaaccagtcatggctaacatgagcggtaaactgaacagGTTGTGGAATGAAACTAAGGCGTGATGATCCTGCAGCCATGAAGGATTTTATTCAGAGTGTGCAGAATAGGGTGAATGAGTTAAAGGCTGCCTCTGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
aaaccag
- - - -catgtaa
- - - - - - - - - - -accaaca
- - - - - - - - - - - - - - -ataagaa
- - - - - - - - - - - - - - - - - - - -aaaagat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgagc