1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gtgttatatataccgacctaaaagaaaatatagtactatgaaatgtaggatttcaagaagtgaacttgtggctaatgcaaatggattgaattatttgcagGAGGAACTGGAAGGCCTTTCTGCCAGCTACCCTGATCACTTTAAAGTTTACTATGTTCTGAATCAG
species | Vitis vinifera |
transcript | Vv08s0056g01150.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATTTGAGGACATTCTCTTGAAG GAGGAACTGGAAGGCCTTTCTGCCAGCTACCCTGATCACTTTAAAGTTTACEST: gi|37188279|gb|CF607628.1|CF607628
genomic: ATTTGAGGACATTCTCTTGAAGgtaatttgct ... ttatttgcagGAGGAACTGGAAGGCCTTTCTGCCAGCTACCCTGATCACTTTAAAGTTTAC
EST: AGGTGCACCTTATTTATGCTAACGTTACATTTGAGGACATTCTCTTGAAG GAGGAACTGGAAGGCCTTTCTGCCAGCTACCCTGATCACTTTAAAGTTTACEST: gi|33406972|gb|CF212599.1|CF212599
genomic: AGGTGCACCTTATTTATGCTAACGTTACATTTGAGGACATTCTCTTGAAGgtaatttgct ... ttatttgcagGAGGAACTGGAAGGCCTTTCTGCCAGCTACCCTGATCACTTTAAAGTTTAC
EST: AGGTGCACCTTATTTATGCTAACGTTACATTTGAGGACATTCTCTTGAAG GAGGAACTGGAAGGCCTTTCTGCCAGCTACCCTGATCACTTTAAAGTTTACEST: gi|33407295|gb|CF212922.1|CF212922
genomic: AGGTGCACCTTATTTATGCTAACGTTACATTTGAGGACATTCTCTTGAAGgtaatttgct ... ttatttgcagGAGGAACTGGAAGGCCTTTCTGCCAGCTACCCTGATCACTTTAAAGTTTAC
EST: AGGTGCACCTTATTTATGCTAACGTTACATTTGAGGACATTCTCTTGAAG GAGGAACTGGAAGGCCTTTCTGCCAGCTACCCTGATCACTTTAAAGTTTACEST: gi|110375510|gb|EC940502.1|EC940502
genomic: AGGTGCACCTTATTTATGCTAACGTTACATTTGAGGACATTCTCTTGAAGgtaatttgct ... ttatttgcagGAGGAACTGGAAGGCCTTTCTGCCAGCTACCCTGATCACTTTAAAGTTTAC
EST: AGGTGCACCTTATTTATGCTAACGTTACATTTGAGGACATTCTCTTGAAG GAGGAACTGGAAGGCCTTTCTGCCAGCTACCCTGATCACTTTAAAGTTTACEST: gi|351024116|gb|FQ423539.1|FQ423539
genomic: AGGTGCACCTTATTTATGCTAACGTTACATTTGAGGACATTCTCTTGAAGgtaatttgct ... ttatttgcagGAGGAACTGGAAGGCCTTTCTGCCAGCTACCCTGATCACTTTAAAGTTTAC
EST: AAGTGCACCTTATTTATGCTAACGTTACATTTGAGGACATTCTCTTGAAG GAGGAACTGGAAGGCCTTTCTGCCAGCTEST: gi|110384799|gb|EC949262.1|EC949262
genomic: AGGTGCACCTTATTTATGCTAACGTTACATTTGAGGACATTCTCTTGAAGgtaatttgct ... ttatttgcagGAGGAACTGGAAGGCCTTTCTGCCAGCT
EST: AGGTGCACCTTATTTATGCTAACGTTACATTTGAGGACATTCTCTTGAAG GAGGAACTGGAAGGCCTTTCTGCCAGCTACCCTGATCACTTTAAAGTTTACEST: gi|110397391|gb|EC963126.1|EC963126
genomic: AGGTGCACCTTATTTATGCTAACGTTACATTTGAGGACATTCTCTTGAAGgtaatttgct ... ttatttgcagGAGGAACTGGAAGGCCTTTCTGCCAGCTACCCTGATCACTTTAAAGTTTAC
EST: AGGTGCACCTTATTTATGCTAACGTTACATTTGAGGACATTCTCTTGAAG GAGGAACTGGAAGGCCTTTCTGCCAGCTACCCTGATCACTTTAAAGTTTACEST: gi|33406880|gb|CF212507.1|CF212507
genomic: AGGTGCACCTTATTTATGCTAACGTTACATTTGAGGACATTCTCTTGAAGgtaatttgct ... ttatttgcagGAGGAACTGGAAGGCCTTTCTGCCAGCTACCCTGATCACTTTAAAGTTTAC
EST: AGGTGCACCTTATTTATGCTAACGTTACATTTGAGGACATTCTCTTGAAG GAGGAACTGGAAGGCCTTTCTGCCAGCTACCCTGATCACTTTAAAGTTTACEST: gi|351015566|gb|FQ426808.1|FQ426808
genomic: AGGTGCACCTTATTTATGCTAACGTTACATTTGAGGACATTCTCTTGAAGgtaatttgct ... ttatttgcagGAGGAACTGGAAGGCCTTTCTGCCAGCTACCCTGATCACTTTAAAGTTTAC
EST: AGGTGCACCTTATTTATGCTAACGTTACATTTGAGGACATTCTCTTGAAG GAGGAACTGGAAGGCCTTTCTGCCAGCTACCCTGATCACTTTAAAGTTTACEST: gi|33407387|gb|CF213014.1|CF213014
genomic: AGGTGCACCTTATTTATGCTAACGTTACATTTGAGGACATTCTCTTGAAGgtaatttgct ... ttatttgcagGAGGAACTGGAAGGCCTTTCTGCCAGCTACCCTGATCACTTTAAAGTTTAC
EST: AGGTGCACCTTATTTATGCTAACGTTACATTTGAGGACATTCTCTTGAAG GAGGAACTGGAAGGCCTTTCTGCCAGCTACCCTGATCACTTTAAAGTTTACEST: gi|110371220|gb|EC935065.1|EC935065
genomic: AGGTGCACCTTATTTATGCTAACGTTACATTTGAGGACATTCTCTTGAAGgtaatttgct ... ttatttgcagGAGGAACTGGAAGGCCTTTCTGCCAGCTACCCTGATCACTTTAAAGTTTAC
EST: AGGTGCACCTTATTTATGCTAACGTTACATTTGAGGACATTCTCTTGAAG GAGGAACTGGAAGGCCTTTCTGCCAGCTACCCTGATCACTTTAAAGTTTAC
genomic: AGGTGCACCTTATTTATGCTAACGTTACATTTGAGGACATTCTCTTGAAGgtaatttgct ... ttatttgcagGAGGAACTGGAAGGCCTTTCTGCCAGCTACCCTGATCACTTTAAAGTTTAC
taggatttcaagaagtgaacttgtggctaatgcaaatggattgaattatttgcagGAGGAACTGGAAGGCCTTTCTGCCAGCTACCCTGATCACTTTAAAGTTTACTATGTTCTGAATCAG
ggctaat putative branch site (score: 3)
attgaattattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgttatatataccgacctaaaagaaaatatagtactatgaaatgtaggatttcaagaagtgaacttgtggctaatgcaaatggattgaattatttgcagGAGGAACTGGAAGGCCTTTCTGCCAGCTACCCTGATCACTTTAAAGTTTACTATGTTCTGAATCAG
- - - - - -accgacc
- - - - - - - - - - -aagaaaa
- - - - - - - - - - - - - - - - - -ctatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - tcaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctaatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatgga