Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattagtggacttggcatagggtatttgagacaacatggttcaagctgaacaaatatttgatttgtttcacatctttgtttagGTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATTGAGGCTACAATTGTAGCTTGCAAGGCTGCTGATGAAGCTGTCAAG

Basic information

species Vitis vinifera
transcript Vv08s0056g00200.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0056g00200.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: LOC_Os05g40420.1 (Oryza sativa), 3'ss of exon 7
gtaattagtggacttggcatagggtatttgagacaacatggttcaagctgaacaaatatttgatttgtttcacatctttgtt-tagGTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATTGAGGCTACAATTGTAGCTTGCAAGGCTGCTGATGAAGCTGTCAAG
||||  |   |   | |  |  |   ||   || |   | ||| ||  |    |    |   |||  |  ||     || ||  |||| || |||||||| ||||||||||| |||||||| ||||||||||| |||||||| ||| | || |||||||| ||||||||||| |||||||||
gtaaaaaacagcacttgtgtgcgacttt---gataggtttgtt-aaattatttacccctaaaattcttaacattctgttcttacagGTCCGCGTTAACCTCCCAAATGGTGATATGGTGGGTCACACTGGTGACATTGAGGCCACAGTGGTTGCTTGCAAAGCTGCTGATGAGGCTGTCAAG

upper sequence: Vv08s0056g00200.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: LOC_Os01g60190.1 (Oryza sativa), 3'ss of exon 7
gtaattagtggacttggcatagggtatttgagacaacatggttcaagctgaacaaatatttgatttgtttcacatctttgtttagGTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATTGAGGCTACAATTGTAGCTTGCAAGGCTGCTGATGAAGCTGTCAAG
|||  || | |  | | |    |||  |      |   |    | |  | ||    |  || |  | |||   |   ||  |||||| ||||| ||||| || |||||||||||||| || ||||||||||||||||| || ||  | || ||||||||||| ||||| ||||| || |||
gtaggtaattgtttcgtc----ggtgctcagatgactgtttgcctatataaaatgttgcttaaaatttttattactctt--ttagGTACGTGTCAACCTGCCGAATGGTGACATGGTTGGTCACACTGGTGATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG

upper sequence: Vv08s0056g00200.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G003385_T02 (Zea mays), 3'ss of exon 7
gtaattagtggacttggcatagggtatttgagacaacatggttcaagctgaacaaatatttgatttgttt---cacatctttgtt-tagGTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATTGAGGCTACAATTGTAGCTTGCAAGGCTGCTGATGAAGCTGTCAAG
                   ||    |||||| |   | |  |  | |           ||  |||| | |   || |   |||||  |||| ||||| ||||| ||||||||||||||||| || |||||||| ||||||||||||||  |||| ||||||||||| |||||||||||||| |||
------------------gtaaataatttgaaatttc-tattagaggagtcttttggtttccatttctcttagcataatgttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG

upper sequence: Vv08s0056g00200.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM5G833389_T02 (Zea mays), 3'ss of exon 7
gtaattagtggacttggcatagggtatttgagacaacatggttcaagctgaacaaatatttgatttgtttcacatctttgtttagGTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATTGAGGCTACAATTGTAGCTTGCAAGGCTGCTGATGAAGCTGTCAAG
         | |  |    |   || | |   | | ||   ||   | |   |      ||| || |  |  | |  ||    |||| ||||| ||||| ||||||||||||||||| || |||||||||||||||||||| ||  | || ||||||||||| |||||||||||||| |||
---------gtaaataatttgaagtttctattagagcactctttcggtttccctg----ttgcttagcctagcgttgttac--agGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG

upper sequence: Vv08s0056g00200.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA09G40690.1 (Glycine max), 3'ss of exon 6
gtaattagtggacttggcatagggtatttgagacaacatggttcaagctgaacaaatatttgatttgtt-tcacatct-ttgtttagGTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATTGAGGCTACAATTGTAGCTTGCAAGGCTGCTGATGAAGCTGTCAAG
|||| ||   |  |   | |     ||||  |  | | || |  ||  | |||   |||||  | | || |    ||| |||| ||||| || || ||||| ||||||||||||||||||||||| || ||||| ||||| || ||| |||| ||||||||||| |||||||  ||||| |||
gtaactaaatggttcaccgtg----attttgggaatcgtgatctaa-ttaaacttttatttactctcttattttgtctgttgtatagGTACGCGTCAACCTTCCAAATGGTGACATGGTGGGGCATACAGGTGACATTGAAGCAACAGTTGTGGCTTGCAAGGCAGCTGATGCTGCTGTGAAG

upper sequence: Vv08s0056g00200.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT3G08590.2 (Arabidopsis thaliana), 3'ss of exon 5
gtaattagtggacttggcatagggtatttgagacaacatggttcaagctgaacaaatatttgatttgtttcacatctttgtttagGTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATTGAGGCTACAATTGTAGCTTGCAAGGCTGCTGATGAAGCTGTCAAG
    | ||  |  ||  | ||    ||| |   ||||     | ||    |     |  |   |||| | |  ||   | || |||| ||||| ||||| |||||||| || ||||||||||| |||||||||||||| || ||  |||| || ||  | |||||||||   ||||| | |
---gtaaggtgtattctcttatcacatt-gtatcaaccca--ttaaaacaattggcttctgagtttggtgccaatggattttcagGTGCGTGTAAACCTGCCAAATGGAGATATGGTGGGGCATACTGGTGATATTGAAGCAACTGTTGTTGCCTGTGAAGCTGCTGATCGTGCTGTGAGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33406503|gb|CF212130.1|CF212130
EST:     CAGCCGCAAATTCCACCAG                         GTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
genomic: CAGCCGCAAATTCCACCAGgtaattagtg ... ctttgtttagGTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
EST: gi|30251274|gb|CB969007.1|CB969007
EST:     AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAG                         GTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
genomic: AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAGgtaattagtg ... ctttgtttagGTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
EST: gi|110386858|gb|EC951490.1|EC951490
EST:     AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAG                         GTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
genomic: AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAGgtaattagtg ... ctttgtttagGTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
EST: gi|71881475|gb|DT030530.1|DT030530
EST:     AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAG                         GTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
genomic: AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAGgtaattagtg ... ctttgtttagGTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
EST: gi|110361200|gb|EC924656.1|EC924656
EST:     AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAG                         GTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
genomic: AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAGgtaattagtg ... ctttgtttagGTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
EST: gi|77583526|gb|DV220799.1|DV220799
EST:     AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAG                         GTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
genomic: AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAGgtaattagtg ... ctttgtttagGTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
EST: gi|29781711|gb|CB346373.2|CB346373
EST:     AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAG                         GTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
genomic: AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAGgtaattagtg ... ctttgtttagGTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
EST: gi|110687320|gb|EE064627.1|EE064627
EST:     AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAG                         GTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
genomic: AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAGgtaattagtg ... ctttgtttagGTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
EST: gi|30252044|gb|CB968683.1|CB968683
EST:     AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAG                         GTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
genomic: AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAGgtaattagtg ... ctttgtttagGTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
EST: gi|110366484|gb|EC930392.1|EC930392
EST:     AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAG                         GTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
genomic: AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAGgtaattagtg ... ctttgtttagGTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
EST: gi|30301264|gb|CB978058.1|CB978058
EST:     AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAG                         GTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
genomic: AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAGgtaattagtg ... ctttgtttagGTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
EST: gi|110725047|gb|EE101410.1|EE101410
EST:     AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAG                         GTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
genomic: AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAGgtaattagtg ... ctttgtttagGTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
EST: gi|110719729|gb|EE095112.1|EE095112
EST:     AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAN                         GTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
genomic: AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAGgtaattagtg ... ctttgtttagGTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
EST: gi|33406588|gb|CF212215.1|CF212215
EST:     AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAG                         GTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
genomic: AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAGgtaattagtg ... ctttgtttagGTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
EST: gi|33403660|gb|CF209287.1|CF209287
EST:     AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAG                         GTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
genomic: AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAGgtaattagtg ... ctttgtttagGTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
EST: gi|28962723|gb|CB341756.1|CB341756
EST:     AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAG                         GTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
genomic: AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAGgtaattagtg ... ctttgtttagGTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
EST: gi|161712531|gb|FC061836.1|FC061836
EST:     AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAG                         GTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
genomic: AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAGgtaattagtg ... ctttgtttagGTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
EST: gi|110724634|gb|EE100633.1|EE100633
EST:     AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAG                         GTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
genomic: AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAGgtaattagtg ... ctttgtttagGTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
EST: gi|161721567|gb|FC070103.1|FC070103
EST:     AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAG                         GTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
genomic: AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAGgtaattagtg ... ctttgtttagGTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
EST: gi|110690736|gb|EE068154.1|EE068154
EST:     AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAG                         GTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
genomic: AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAGgtaattagtg ... ctttgtttagGTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
EST: gi|33403584|gb|CF209211.1|CF209211
EST:     AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAG                         GTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
genomic: AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAGgtaattagtg ... ctttgtttagGTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
EST: gi|30305831|gb|CB982625.1|CB982625
EST:     AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAG                         GTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
genomic: AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAGgtaattagtg ... ctttgtttagGTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
EST: gi|33409439|gb|CF215066.1|CF215066
EST:     CAGCCGCAAATTCCACCAG                         GTTCGTGTTAACCCACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
genomic: CAGCCGCAAATTCCACCAGgtaattagtg ... ctttgtttagGTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
EST: gi|110361556|gb|EC925038.1|EC925038
EST:     AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAG                         GTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
genomic: AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAGgtaattagtg ... ctttgtttagGTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
EST: gi|110716747|gb|EE091997.1|EE091997
EST:     GGATGCTATCCTCAGCCGCAAATTCCACCAG                         GTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
genomic: GGATGCTATCCTCAGCCGCAAATTCCACCAGgtaattagtg ... ctttgtttagGTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
EST: gi|110709676|gb|EE085346.1|EE085346
EST:     AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAG                         GTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
genomic: AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAGgtaattagtg ... ctttgtttagGTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
EST: gi|29783243|gb|CB349288.2|CB349288
EST:     AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAG                         GTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
genomic: AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAGgtaattagtg ... ctttgtttagGTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
EST: gi|29783288|gb|CB349373.2|CB349373
EST:     AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAG                         GTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
genomic: AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAGgtaattagtg ... ctttgtttagGTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
EST: gi|30301324|gb|CB978118.1|CB978118
EST:     AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAG                         GTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
genomic: AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAGgtaattagtg ... ctttgtttagGTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
EST: gi|30251262|gb|CB968995.1|CB968995
EST:     AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAG                         GTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
genomic: AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAGgtaattagtg ... ctttgtttagGTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
EST: gi|30251347|gb|CB969080.1|CB969080
EST:     AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAG                         GTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
genomic: AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAGgtaattagtg ... ctttgtttagGTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
EST: gi|30252132|gb|CB968771.1|CB968771
EST:     CAAATTCCACCAG                         GTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
genomic: CAAATTCCACCAGgtaattagtg ... ctttgtttagGTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
EST: gi|110717711|gb|EE093807.1|EE093807
EST:     AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAG                         GTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
genomic: AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAGgtaattagtg ... ctttgtttagGTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
EST: gi|110391170|gb|EC956127.1|EC956127
EST:     AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAG                         GTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
genomic: AGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAGgtaattagtg ... ctttgtttagGTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
EST: gi|30251358|gb|CB969091.1|CB969091
EST:     ATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAG                         GTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT
genomic: ATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAGgtaattagtg ... ctttgtttagGTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agacaacatggttcaagctgaacaaatatttgatttgtttcacatctttgtttagGTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATTGAGGCTACAATTGTAGCTTGCAAGGCTGCTGATGAAGCTGTCAAG
                           atttgat  putative branch site (score: 5)
                                            tctttgttt  putative PPT
                       aaatatttgatttgtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaattagtggacttggcatagggtatttgagacaacatggttcaagctgaacaaatatttgatttgtttcacatctttgtttagGTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATTGAGGCTACAATTGTAGCTTGCAAGGCTGCTGATGAAGCTGTCAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG