Sequence
atgc intronic sequence ATGC exonic sequence...attatgatttgctgcacttgatagcccctgaattcagataggctagagtacttgttattcatttcatgactctaccttttacctcctcgtaactgtgcagATTTTGAAAACTATGCGTGAGGCAGGAATTAAACCAGATGTTGTTGCATATACAACAGCTATCAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0040g03240.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA19G36140.3 (Glycine max), 3'ss of exon 8
-----attatgatttgctgcacttgatagcccctgaattcagataggctagagtacttgttattcatttcatgactctaccttttacctcctcgtaactgtgcagATTTTGAAAACTATGCGTGAGGCAGGAATTAAACCAGATGTTGTTGCATATACAACAGCTATCAAG
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cctgaatattgatatgcagagctcag--attattgtactttgcttctttgtatca-tgataatgcatttagtt-ctctga-tgagatgactatgttcccatgcagATTTTGAAAACCATGGGTGATGCTGGAATTAAACCTGATGTTATTGCATATACAACAGCCATTAAG
upper sequence: Vv08s0040g03240.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA03G33410.1 (Glycine max), 3'ss of exon 6
-----attatgatttgctgcacttgatagcccctgaattcagataggctagagtacttgttattcatttcatgactctaccttttacctcctcgtaactgtgcagATTTTGAAAACTATGCGTGAGGCAGGAATTAAACCAGATGTTGTTGCATATACAACAGCTATCAAG
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cctgaatattgatatgcagag--tactgatcattgtacttcgcttatctgtatca-tgataatgcatttagttctctgatcagatgactat--gttcccatgcagATTTTGAAAACCATGGGTGATGCTGGAATTAAACCTGGTGTTATTGCATATACAACAGCCATGAAG
upper sequence: Vv08s0040g03240.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT5G02830.1 (Arabidopsis thaliana), 3'ss of exon 6
-----------------------------------------------------------------------------------attatgatt-tgctgcacttgat----agcccctgaattc-------agataggctagagtacttgttattcatttcatgactctaccttttacctcctcgtaactgtgcagATTTTGAAAACTATGCGTGAGGCAGGAATTAAACCAGATGTTGTTGCATATACAACAGCTATCAAG
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gtgagttaacttttctcttgattttttttttaaaattaatcattcaaatctctttcctaaaacagagatatagcattaaggtgatcatacttctccagcttttgtttataagcttccagatacattcataatatcaatgatgggatttgc-agtaatatgataagttccctgatagaaattcttttccagcacagATTTTGAGAACTATGCATTCGGCTGGAACCAGACCTGATGTTGTTGCATACACAACAGCAATCAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gagtacttgttattcatttcatgactctaccttttacctcctcgtaactgtgcagATTTTGAAAACTATGCGTGAGGCAGGAATTAAACCAGATGTTGTTGCATATACAACAGCTATCAAG
tcgtaac putative branch site (score: 2)
ttattcattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
attatgatttgctgcacttgatagcccctgaattcagataggctagagtacttgttattcatttcatgactctaccttttacctcctcgtaactgtgcagATTTTGAAAACTATGCGTGAGGCAGGAATTAAACCAGATGTTGTTGCATATACAACAGCTATCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - -gcacttg
- - - - - - - - - - - - cccctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttcatg