1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttacccacttgaatcatatgaatttgattaatgattctcttactatgaaggatatttcttgtcagaagaatgctaatgagtctatgtggaacttttgtagGTATTATTGTTGATGAGAAACCTCACTATCAACTTGTCTAGCCCTGATTTTGAGCCAATT
species | Vitis vinifera |
transcript | Vv08s0040g03220.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGGGTCAAATAGAGAAGCTCAAGGAGATGGATCCCATTAATTTTGAAACT GTATTATTGTTGATGAGAAACCTCACTATCAACTTGTCTAGCCCTGATTTTEST: gi|349821355|gb|FQ410976.1|FQ410976
genomic: AGGGTCAAATAGAGAAGCTCAAGGAGATGGATCCCATTAATTTTGAAACTgtgagttaaa ... acttttgtagGTATTATTGTTGATGAGAAACCTCACTATCAACTTGTCTAGCCCTGATTTT
EST: AGGGTCAAATAGAGAAGCTCAAGGAGATGGATCCCATTAATTTTGAAACT GTATTATTGTTGATGAGAAACCTCACTATCAACTTGTCTAGCCCTGATTTTEST: gi|26256837|gb|CA807900.1|CA807900
genomic: AGGGTCAAATAGAGAAGCTCAAGGAGATGGATCCCATTAATTTTGAAACTgtgagttaaa ... acttttgtagGTATTATTGTTGATGAGAAACCTCACTATCAACTTGTCTAGCCCTGATTTT
EST: GATGGAT-CCATTAATTTTGAAACT GTATTATTGTTGATGAGAAACCTCACTATCAACTTGTCTAGCCCTGATTTT
genomic: GATGGATCCCATTAATTTTGAAACTgtgagttaaa ... acttttgtagGTATTATTGTTGATGAGAAACCTCACTATCAACTTGTCTAGCCCTGATTTT
tgaaggatatttcttgtcagaagaatgctaatgagtctatgtggaacttttgtagGTATTATTGTTGATGAGAAACCTCACTATCAACTTGTCTAGCCCTGATTTTGAGCCAATT
tgctaat putative branch site (score: 2)
cttttgt putative PPT
atatttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttacccacttgaatcatatgaatttgattaatgattctcttactatgaaggatatttcttgtcagaagaatgctaatgagtctatgtggaacttttgtagGTATTATTGTTGATGAGAAACCTCACTATCAACTTGTCTAGCCCTGATTTTGAGCCAATT
- -cccactt
- - - - - - - - - - - - - - - - - - - - - ctatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctatgtg