1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgtgttattttaatggcaataaaacatactgtggctgatcccctattgccctaatgcattcacttgtgaatcatgaatctatttcattttgattttgcagAATTTGTGCAAGTCATCTCTCGTTCACACCTGAAAATGCGTGTTTGGGAGCGTGGAGCAG
species | Vitis vinifera |
transcript | Vv08s0040g02540.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGGTCCAAAATTTGAGCATCATGCTATGTTTCCTGCTCGAACTAATACAG AATTTGTGCAAGTCATCTCTCGTTCACACCTGAAAATGCGTGTTTGGGAGCEST: gi|110379227|gb|EC944409.1|EC944409
genomic: TGGTCCAAAATTTGAGCATCATGCTATGTTTCCTGCTCGAACTAATACAGgtttgttttt ... gattttgcagAATTTGTGCAAGTCATCTCTCGTTCACACCTGAAAATGCGTGTTTGGGAGC
EST: TGGTCCAAAATTTGAGCATCATGCTATGTTTCCTGCTCGAACTAATACAG AATTTGTGCAAGTCATCTCTCGTTCACACCTGAAAATGCGTGTTTGGGAGCEST: gi|110363795|gb|EC927411.1|EC927411
genomic: TGGTCCAAAATTTGAGCATCATGCTATGTTTCCTGCTCGAACTAATACAGgtttgttttt ... gattttgcagAATTTGTGCAAGTCATCTCTCGTTCACACCTGAAAATGCGTGTTTGGGAGC
EST: TGGTCCAAAATTTGAGCATCATGCTATGTTTCCTGCTCGAACTAATACAG AATTTGTGCAAGTCATCTCTCGTTCACACCTGAAAATGCGTGTTTGGGAGCEST: gi|34549331|gb|CF517563.1|CF517563
genomic: TGGTCCAAAATTTGAGCATCATGCTATGTTTCCTGCTCGAACTAATACAGgtttgttttt ... gattttgcagAATTTGTGCAAGTCATCTCTCGTTCACACCTGAAAATGCGTGTTTGGGAGC
EST: TGGTCCAAAATTTGAGCATCATGCTATGTTTCCTGCTCGAACTAATACAG AATTTGTGCAAGTCATCTCTCGTTCACACCTGAAAATGCGTGTTTGGGAGCEST: gi|30131639|gb|CB916978.1|CB916978
genomic: TGGTCCAAAATTTGAGCATCATGCTATGTTTCCTGCTCGAACTAATACAGgtttgttttt ... gattttgcagAATTTGTGCAAGTCATCTCTCGTTCACACCTGAAAATGCGTGTTTGGGAGC
EST: TGGTCCAAAATTTGAGCATCATGCTATGTTTCCTGCTCGAACTAATACAG AATTTGTGCCAGTCATCTCTCEST: gi|32458996|gb|CD800170.1|CD800170
genomic: TGGTCCAAAATTTGAGCATCATGCTATGTTTCCTGCTCGAACTAATACAGgtttgttttt ... gattttgcagAATTTGTGCAAGTCATCTCTC
EST: TGGTCCAAAATTTGAGCATCATGCTATGTTTCCTGCTCGAACTAATACAG AATTTGTGCAAGTCATCTCTCGTTCACACCTGAAAATGCGTGTTTGGGAGCEST: gi|110382285|gb|EC939068.1|EC939068
genomic: TGGTCCAAAATTTGAGCATCATGCTATGTTTCCTGCTCGAACTAATACAGgtttgttttt ... gattttgcagAATTTGTGCAAGTCATCTCTCGTTCACACCTGAAAATGCGTGTTTGGGAGC
EST: TGGTCCAAAATTTGAGCATCATGCTATGTTTCCTGCTCGAACTAATACAG AATTTGTGCAAGTCATCTCTCGTTCACACCTGAAAATGCGTGTTTGGGAGCEST: gi|110728275|gb|EE103711.1|EE103711
genomic: TGGTCCAAAATTTGAGCATCATGCTATGTTTCCTGCTCGAACTAATACAGgtttgttttt ... gattttgcagAATTTGTGCAAGTCATCTCTCGTTCACACCTGAAAATGCGTGTTTGGGAGC
EST: TGGTCCAAAATTTGAGCATCATGCTATGTTTCCTGCTCGAACTAATACAG AATTTGTGCAAGTCATCTCTCGTTCACACCTGAAAATGCGTGTTTGGGAGCEST: gi|110717263|gb|EE092967.1|EE092967
genomic: TGGTCCAAAATTTGAGCATCATGCTATGTTTCCTGCTCGAACTAATACAGgtttgttttt ... gattttgcagAATTTGTGCAAGTCATCTCTCGTTCACACCTGAAAATGCGTGTTTGGGAGC
EST: TGGTCCAAAATTTGAGCATCATGCTATGTTTCCTGCTCGAACTAATACAG AATTTGTGCAAGTCATCTCTCGTTCACACCTGAAAATGCGTGTTTGGGAGCEST: gi|110423955|gb|EC990308.1|EC990308
genomic: TGGTCCAAAATTTGAGCATCATGCTATGTTTCCTGCTCGAACTAATACAGgtttgttttt ... gattttgcagAATTTGTGCAAGTCATCTCTCGTTCACACCTGAAAATGCGTGTTTGGGAGC
EST: TGGTCCAAAATTTGAGCATCATGCTATGTTTCCTGCTCGAACTAATACAG AATTTGTGCAAGTCATCTCTCGTTCACACCTGAAAATGCGTGTTTGGGAGC
genomic: TGGTCCAAAATTTGAGCATCATGCTATGTTTCCTGCTCGAACTAATACAGgtttgttttt ... gattttgcagAATTTGTGCAAGTCATCTCTCGTTCACACCTGAAAATGCGTGTTTGGGAGC
ttgccctaatgcattcacttgtgaatcatgaatctatttcattttgattttgcagAATTTGTGCAAGTCATCTCTCGTTCACACCTGAAAATGCGTGTTTGGGAGCGTGGAGCAG
aatctatttcattttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgttattttaatggcaataaaacatactgtggctgatcccctattgccctaatgcattcacttgtgaatcatgaatctatttcattttgattttgcagAATTTGTGCAAGTCATCTCTCGTTCACACCTGAAAATGCGTGTTTGGGAGCGTGGAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - -aataaaa
- - - - - - - - - - - - catactg
- - - - - - - - - - - - - - - -tggctga
- - - - - - - - - - - - - - - - - - - tccccta
- - - - - - - - - - - - - - - - - - - - - - - tgcccta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - cattcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgaat