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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagaaaaagatgacaagatatatttcctctcccaattacttctaaaccttgaattaatcttgaccttgattaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTACCGACACTACACTGATATCAATGAGCTCCCTCCGCACCGTTTGGCTGAGA

Basic information

species Vitis vinifera
transcript Vv08s0040g02470.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0040g02470.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: LOC_Os05g02310.1 (Oryza sativa), 3'ss of exon 6
gtagaaaaagatgacaagatatatttcctctc-ccaattact--tctaaacct--tgaattaatcttgacc-----ttgattaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTACCGACACTACACTGATATCAATGAGCTCCCTCCGCACCGTTTGGCTGAGA
||        ||  ||| || ||     ||   | || | ||  ||| | ||   ||  |  ||  |||||     ||  ||   ||||||||||  |||||||||||| ||||| ||||||||||||||||||||||||   || |||| ||||||||| |||||||| || ||||| |||||||| |
gtttggcttcattccaacatttacaaagtccagcgaaatgctattctgatccccatgtttctattctgaccccatgtttgtttgaacagGGAGAGGCAGATGACAAGATTATTGCCGTTTGTGCTGATGATCCTGAGTACAAGCATTACAATGATATCAAGGAGCTCCCACCTCACCGCTTGGCTGAAA

upper sequence: Vv08s0040g02470.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: LOC_Os01g74350.1 (Oryza sativa), 3'ss of exon 7
gtagaaaaagatgacaagatatatttcctctcccaattacttctaaaccttgaattaatcttgaccttgattaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTACCGACACTACACTGATATCAATGAGCTCCCTCCGCACCGTTTGGCTGAGA
             ||   | |  |   || ||   |  |    | |||   || |  |   ||     | || |  |||||||||  |||||| ||||| |||||||| |||||||||||||||||||||   || ||||  |||||||| || ||||| || ||||| || ||||| |
--gtttggtccctactcaacaagtgcgctttcttcagaatgaatgaaca--gattctaaagtggtaaggttttatccagGGAGAGGCAGATGATAAGATTATTGCAGTCTGTGCTGATGATCCTGAGTACAAGCATTACAACGATATCAAGGACCTCCCACCTCACCGCTTAGCTGAAA

upper sequence: Vv08s0040g02470.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA13G19500.2 (Glycine max), 3'ss of exon 6
---------------------------------------------------------------------------------gtagaaaaagatgacaagatatatttcctctcccaattacttctaaaccttgaattaatcttgaccttgattaa-cacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTACCGACACTACACTGATATCAATGAGCTCCCTCCGCACCGTTTGGCTGAGA
                                                                                  || | | | ||    | |||||| |    |    | | ||| | |   ||||  ||   || |   |||| ||   ||||| ||||||||||||||||||||||| || ||||||||||||||||||||  | || |||| ||||||||| ||||| ||||| |||||||| ||||| |
gtatattagacattccctttttccacaaagcaagagcctctctctctctctctctctctctctctctctctctctatatatatatatatatatatatatatatatatatatttagcagttcttttgattattgatctaccattaattgtgatcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTATAGGCATTACAATGATATCAAGGAGCTTCCTCCACACCGTTTAGCTGAAA

upper sequence: Vv08s0040g02470.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA10G05130.1 (Glycine max), 3'ss of exon 6
--------------------------gtagaaaaagatgacaagatatatttcctctcccaattacttctaaaccttgaattaatcttgaccttgattaa-cacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTACCGACACTACACTGATATCAATGAGCTCCCTCCGCACCGTTTGGCTGAGA
                            || || ||           | ||  ||||  || || ||| | |   ||||   |   || |   |||| ||   ||||| ||||||||||||||||||||||| || ||||||||||||||||||||  | || |||| ||||||||| || || ||||| |||||||| ||||| |
gtatgttagatattccctttttccacaaagcaagagcctctctctctttttctctctagcagtt-cttttgattattgatcaaccattaattgtgatgaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTATAGGCATTACAATGATATCAAGGACCTTCCTCCTCACCGTTTAGCTGAAA

upper sequence: Vv08s0040g02470.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA03G33000.6 (Glycine max), 3'ss of exon 8
gtagaaaaagatgacaagatatatttcctctcccaattacttct-----------aaaccttgaattaatcttgaccttgatta-acacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTACCGACACTACACTGATATCAATGAGCTCCCTCCGCACCGTTTGGCTGAGA
||| |  ||     |     || |  |      |||  ||| ||            ||  |||||| |    | |    | | | | | |||| ||||||||||| ||||||||||| || |||||||||||||| ||||| ||||| |||| ||||||||| ||||| ||||| || ||||| ||||| |
gtaaattaaacactcccaccatttcccacacggcaagaactcctcttttgatgttgaatattgaataaccacttattgcgctgatataaagGGGGAGAAAGATGATAAGATAATTGCTGTCTGTGCTGATGATCCCGAGTATCGACATTACAATGATATCAAGGAGCTTCCTCCACATCGTTTAGCTGAAA

upper sequence: Vv08s0040g02470.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA19G35710.2 (Glycine max), 3'ss of exon 8
------------gtagaaaaagatgacaagatatatttcctctcccaattacttctaaaccttgaattaatcttgaccttgatta-acacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTACCGACACTACACTGATATCAATGAGCTCCCTCCGCACCGTTTGGCTGAGA
             |   |      |  | |  | |  ||||||    |||| |    ||   ||||| |    | |   || | |   | |||| ||||||||||| || || ||||| || ||||||||||||||||||||  |||| |||| ||||||||| ||||| ||||| || ||||| ||||| |
gtaaattaaaccctctcatttcccgcaaggcaagaactcctcttttgattatt---gaatactgaataaccactaattgtgctgatgtaaagGGGGAGAAAGATGATAAAATTATTGCTGTCTGTGCTGATGATCCTGAGTATAGACATTACAATGATATCAAAGAGCTTCCTCCACATCGTTTAGCTGAAA

upper sequence: Vv08s0040g02470.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: PP1S46_53V6.1 (Physcomitrella patens), 3'ss of exon 7
-------------------------------------------gtagaaaaagatgacaagat-atatt-tcctctcccaattactt-ctaaaccttgaattaatcttgaccttg-attaac--acagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTACCGACACTACACTGATATCAATGAGCTCCCTCCGCACCGTTTGGCTGAGA
                                           |     |  ||| |     | ||||| | |   || ||| |    ||| |  |  |  |||| || |  ||| |   ||    |||||||||| ||||||||||| || || || |||||||| ||||| |||||  |||||| ||  || ||||||||| | ||||| || ||  | || || |
gtgagggactattatgccgtactctttgacggaaaccaaactagcttgtattgatcatgttctcatattgttcgtacctaatcatccactatatgtaaatctaatgttaaatttgtaaggacctgtagGGAGAGAAGGATGACAAGATCATCGCTGTCTGTGCTGACGATCCGGAGTATAGACACTTCAAAGACATCAATGAGTTTCCTCCACATCGACTTGCCGAAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71889504|gb|DT038559.1|DT038559
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|352795193|gb|FQ477303.1|FQ477303
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|71878052|gb|DT027107.1|DT027107
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|110364488|gb|EC924298.1|EC924298
EST:     GGTGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|30128230|gb|CB913569.1|CB913569
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|18458986|gb|BM437264.1|BM437264
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|110375226|gb|EC940190.1|EC940190
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|32248919|gb|CD714738.1|CD714738
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|30124847|gb|CB910186.1|CB910186
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|71885238|gb|DT034293.1|DT034293
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|46919415|gb|CN548744.1|CN548744
EST:     CATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: CATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|110428791|gb|EC995272.1|EC995272
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|32272447|gb|CD721606.1|CD721606
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|32248310|gb|CD714129.1|CD714129
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|110429862|gb|EC996373.1|EC996373
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|71882429|gb|DT031484.1|DT031484
EST:     ATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGGCCTATGATTGATCAG                         GGAGAGAAAGATGACCAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: ATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATG-CCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|33406231|gb|CF211858.1|CF211858
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|110383531|gb|EC947909.1|EC947909
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|110360555|gb|EC923759.1|EC923759
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|110708943|gb|EE083969.1|EE083969
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|110706103|gb|EE083706.1|EE083706
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|22009034|gb|BQ794068.1|BQ794068
EST:     TGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: TGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|110717369|gb|EE093164.1|EE093164
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|110701996|gb|EE080208.1|EE080208
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|32271061|gb|CD720220.1|CD720220
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|110717373|gb|EE093175.1|EE093175
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|110714631|gb|EE091760.1|EE091760
EST:     CTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: CTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|27584534|gb|CB007229.1|CB007229
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|110697749|gb|EE075008.1|EE075008
EST:     CTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: CTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|110731173|gb|EE109089.1|EE109089
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|32272325|gb|CD721484.1|CD721484
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|71888705|gb|DT037760.1|DT037760
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACA
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACA
EST: gi|110686108|gb|EE063413.1|EE063413
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|110725753|gb|EE102618.1|EE102618
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAAAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|110688777|gb|EE067713.1|EE067713
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|110717105|gb|EE092669.1|EE092669
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|30129868|gb|CB915207.1|CB915207
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGANAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|27583109|gb|CB005804.1|CB005804
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|110369553|gb|EC933716.1|EC933716
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|351025513|gb|FQ435206.1|FQ435206
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|110717897|gb|EE094154.1|EE094154
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|32249271|gb|CD715090.1|CD715090
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|110730667|gb|EE108007.1|EE108007
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|22008770|gb|BQ793804.1|BQ793804
EST:     AGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: AGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|110703181|gb|EE079800.1|EE079800
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|30136583|gb|CB921921.1|CB921921
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|22007273|gb|BQ792307.1|BQ792307
EST:     GATG-TTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|32249038|gb|CD714857.1|CD714857
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|110423615|gb|EC989962.1|EC989962
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|110383209|gb|EC947567.1|EC947567
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|110727272|gb|EE103839.1|EE103839
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|46918179|gb|CN547508.1|CN547508
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|71877690|gb|DT026745.1|DT026745
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|33406869|gb|CF212496.1|CF212496
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|110700548|gb|EE078712.1|EE078712
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|110690416|gb|EE067494.1|EE067494
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|71878583|gb|DT027638.1|DT027638
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|71888253|gb|DT037308.1|DT037308
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|30133070|gb|CB918409.1|CB918409
EST:     TGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: TGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|32271206|gb|CD720365.1|CD720365
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|110723089|gb|EE099999.1|EE099999
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|22012127|gb|BQ797161.1|BQ797161
EST:     CTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: CTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|110397892|gb|EC963867.1|EC963867
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|351012488|gb|FQ427089.1|FQ427089
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|110370417|gb|EC929648.1|EC929648
EST:     CCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: CCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|110374151|gb|EC938723.1|EC938723
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|110384899|gb|EC949367.1|EC949367
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
EST: gi|32267585|gb|CD716548.1|CD716548
EST:     GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaaaaag ... attaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcctctcccaattacttctaaaccttgaattaatcttgaccttgattaacacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTACCGACACTACACTGATATCAATGAGCTCCCTCCGCACCGTTTGGCTGAGA
                                            gattaac  putative branch site (score: 2)
                         ttgaattaat  TA-rich tract