1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tggctagatgtatgacatgaaaactaattagtacttttctattttaattcaatttcttgctttatatagaagggtaataattagtccttgatgttctcagATACATATCGTGCGTTGTGGGTTGTCCACTGGAAGGAGTAGTATCTCCATCAAAAGTAACATATGTGGGTAAAGAACTTTATGATATGGGTTGCTATGAA
species | Vitis vinifera |
transcript | Vv08s0040g01170.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TACCGTGATGTTGCTCTTGCTGCTAGAAAGCTCTCAATCCCTGTTCGTGG ATACATATCGTGTGTTGTGGGTTGTCCACTGGAAGGAGTAGTATCTCCATCEST: gi|161706899|gb|FC056793.1|FC056793
genomic: TACCGTGATGTTGCTCTTGCTGCTAGAAAGCTCTCAATCCCTGTTCGTGGgtatgtcttc ... atgttctcagATACATATCGTGCGTTGTGGGTTGTCCACTGGAAGGAGTAGTATCTCCATC
EST: TACCGTGATGTTGCTCTTGCTGCTAGAAAGCTCTCAATCCCTGTTCGTGG ATACATATCGTGCGTTGTGGGTTGTCCACTGGAAGGAGTAGTATCTCCATCEST: gi|110402734|gb|EC960886.1|EC960886
genomic: TACCGTGATGTTGCTCTTGCTGCTAGAAAGCTCTCAATCCCTGTTCGTGGgtatgtcttc ... atgttctcagATACATATCGTGCGTTGTGGGTTGTCCACTGGAAGGAGTAGTATCTCCATC
EST: TACCGTGATGTTGCTCTTGCTGCTAGAAAGCTCTCAATCCCTGTTCGTGG ATACATATCGTGTGTTGTGGGTTGTCCACTGGAAGGAGTAGTATCTCCATCEST: gi|37184311|gb|CF603665.1|CF603665
genomic: TACCGTGATGTTGCTCTTGCTGCTAGAAAGCTCTCAATCCCTGTTCGTGGgtatgtcttc ... atgttctcagATACATATCGTGCGTTGTGGGTTGTCCACTGGAAGGAGTAGTATCTCCATC
EST: TACCGTGATGTTGCTCTTGCTGCTAGAAAGCTCTCAATCCCTGTTCGTGG ATACATATCGTGCGTTGTGGGTTGTCCACTGGAAGGAGTAGTATCTCCATC
genomic: TACCGTGATGTTGCTCTTGCTGCTAGAAAGCTCTCAATCCCTGTTCGTGGgtatgtcttc ... atgttctcagATACATATCGTGCGTTGTGGGTTGTCCACTGGAAGGAGTAGTATCTCCATC
aattcaatttcttgctttatatagaagggtaataattagtccttgatgttctcagATACATATCGTGCGTTGTGGGTTGTCCACTGGAAGGAGTAGTATCTCCATCAAAAGTAACATATGTGGGTAAAGAACTTTATGATATGGGTTGCTATGAA
tgttctc CT-rich tract
tttatatagaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggctagatgtatgacatgaaaactaattagtacttttctattttaattcaatttcttgctttatatagaagggtaataattagtccttgatgttctcagATACATATCGTGCGTTGTGGGTTGTCCACTGGAAGGAGTAGTATCTCCATCAAAAGTAACATATGTGGGTAAAGAACTTTATGATATGGGTTGCTATGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
tggctag
- - - - - - -gacatga
- - - - - - - - - - aaactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtccttg