Sequence
atgc intronic sequence ATGC exonic sequence...gcctgtatttaatttatttaaacacactgttatagatttaattgatttcacttgtggagttcatttgttaattttgtttatctatgatgattggcttcagATGCACACCTGTTACCAGTTGATTTGCCAGAGATAATGTCTTTGACAGGCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0040g00290.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA19G30500.1 (Glycine max), 3'ss of exon 10
--gcctgta--tttaatttatttaaacacactgttatagatttaattgatttcacttgtggagttcatttgttaattttgtttatctatgatgattggcttcagATGCACACCTGTTACCAGTTGATTTGCCAGAGATAATGTCTTTGACAGGCAG
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gtggttgtaacattcatggtttgcaatttgtcaaattattttggatttttttctttctgaaatctgatatattgata--attactcattgttgact--tttcagATGCACATTTGTTACCTGTTGATTTGCCAGAAATATTATCATTGACAGGCAG
upper sequence: Vv08s0040g00290.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA03G27520.1 (Glycine max), 3'ss of exon 10
gcctgtatttaatttatttaaa---cacactgttatagatttaattgatttcacttgtggagttcatttgttaattttgtttatctatgatgattggctt--cagATGCACACCTGTTACCAGTTGATTTGCCAGAGATAATGTCTTTGACAGGCAG
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---tgtggttgtaacattcatggtttgcaatttttcaaatattttggattttttttcttctgaa-atctgata-tattgataattactcattgttgacttttcagATGCACATTTGTTACCTGTTGATTTGCCGGAAATATTATCATTGACAGGCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110707577|gb|EE084138.1|EE084138EST: ATCCTCAACATTGGGTTCTGTTCACTTTGCATCAAAGCCTCCATCATTGG ATGCACACCTGTTACCAGTTGATTTGCCAGAGATAATGTCTTTGACAGGCA
genomic: ATCCTCAACATTGGGTTCTGTTCACTTTGCATCAAAGCCTCCATCATTGGgtatgcaagc ... ttggcttcagATGCACACCTGTTACCAGTTGATTTGCCAGAGATAATGTCTTTGACAGGCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttcacttgtggagttcatttgttaattttgtttatctatgatgattggcttcagATGCACACCTGTTACCAGTTGATTTGCCAGAGATAATGTCTTTGACAGGCAG
tgttaat putative branch site (score: 3)
atttgttaattttgtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gcctgtatttaatttatttaaacacactgttatagatttaattgatttcacttgtggagttcatttgttaattttgtttatctatgatgattggcttcagATGCACACCTGTTACCAGTTGATTTGCCAGAGATAATGTCTTTGACAGGCAG
gcctgta
- - - - - - - - - - aacacac