1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...tgtcatttgaaggattagttgttgtataagcatactgggatggcacacacattctgatgttttcttttccattctcttatgattttgatgttaaatacagGTTCAGGACCCAGATCTAACTGGTGTAAGCCATTTGCTAGTGGATGAAATTCATGAAAGAGGCATGAATGAGGACTTCCTTTTAATAATTTTGCATGACC
species | Vitis vinifera |
transcript | Vv08s0032g01230.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTCAAACACGTTTGCTATTTTGCACCACTGGAGTACTACTTCGGCAGCTG GTTCAGGACCCAGATCTAACTGGTGTAAGCCATTTGCTAGTGGATGAAATTEST: gi|352778146|gb|FQ468808.1|FQ468808
genomic: CTCAAACACGTTTGCTATTTTGCACCACTGGAGTACTACTTCGGCAGCTGgtaatatatt ... ttaaatacagGTTCAGGACCCAGATCTAACTGGTGTAAGCCATTTGCTAGTGGATGAAATT
EST: CTCAAACACGTTTGCTATTTTGCACCACTGGAGTACTACTTCGGCAGCTG GTTCAGGACCCAGATCTAACTGGTGTAAGCCATTTGCTAGTGGATGAAATTEST: gi|352764590|gb|FQ472947.1|FQ472947
genomic: CTCAAACACGTTTGCTATTTTGCACCACTGGAGTACTACTTCGGCAGCTGgtaatatatt ... ttaaatacagGTTCAGGACCCAGATCTAACTGGTGTAAGCCATTTGCTAGTGGATGAAATT
EST: CTCAAACACGTTTGCTATTTTGCACCACTGGAGTACTACTTCGGCAGCTG GTTCAGGACCCAGATCTAACTGGTGTAAGCCATTTGCTAGTGGATGAAATTEST: gi|352773574|gb|FQ472356.1|FQ472356
genomic: CTCAAACACGTTTGCTATTTTGCACCACTGGAGTACTACTTCGGCAGCTGgtaatatatt ... ttaaatacagGTTCAGGACCCAGATCTAACTGGTGTAAGCCATTTGCTAGTGGATGAAATT
EST: CTCAAACACGTTTGCTATTTTGCACCACTGGAGTACTACTTCGGCAGCTG GTTCAGGACCCAGATCTAACTGGTGTAAGCCATTTGCTAGTGGATGAAATTEST: gi|352768279|gb|FQ469454.1|FQ469454
genomic: CTCAAACACGTTTGCTATTTTGCACCACTGGAGTACTACTTCGGCAGCTGgtaatatatt ... ttaaatacagGTTCAGGACCCAGATCTAACTGGTGTAAGCCATTTGCTAGTGGATGAAATT
EST: CTCAAACACGTTTGCTATTTTGCACCACTGGAGTACTACTTCGGCAGCTG GTTCAGGACCCAGATCTAACTGGTGTAAGCCATTTGCTAGTGGATGAAATTEST: gi|352782101|gb|FQ470003.1|FQ470003
genomic: CTCAAACACGTTTGCTATTTTGCACCACTGGAGTACTACTTCGGCAGCTGgtaatatatt ... ttaaatacagGTTCAGGACCCAGATCTAACTGGTGTAAGCCATTTGCTAGTGGATGAAATT
EST: CTCAAACACGTTTGCTATTTTGCACCACTGGAGTACTACTTCGGCAGCTG GTTCAGGACCCAGATCTAACTGGTGTAAGCCATTTGCTAGTGGATGAAATTEST: gi|352763797|gb|FQ473500.1|FQ473500
genomic: CTCAAACACGTTTGCTATTTTGCACCACTGGAGTACTACTTCGGCAGCTGgtaatatatt ... ttaaatacagGTTCAGGACCCAGATCTAACTGGTGTAAGCCATTTGCTAGTGGATGAAATT
EST: CTCAAACACGTTTGCTATTTTGCACCACTGGAGTACTACTTCGGCAGCTG GTTCAGGACCCAGATCTAACTGGTGTAAGCCATTTGCTAGTGGATGAAATT
genomic: CTCAAACACGTTTGCTATTTTGCACCACTGGAGTACTACTTCGGCAGCTGgtaatatatt ... ttaaatacagGTTCAGGACCCAGATCTAACTGGTGTAAGCCATTTGCTAGTGGATGAAATT
cacacattctgatgttttcttttccattctcttatgattttgatgttaaatacagGTTCAGGACCCAGATCTAACTGGTGTAAGCCATTTGCTAGTGGATGAAATTCATGAAAGAGGCATGAATGAGGACTTCCTTTTAATAATTTTGCATGACC
ttatgattttgatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtcatttgaaggattagttgttgtataagcatactgggatggcacacacattctgatgttttcttttccattctcttatgattttgatgttaaatacagGTTCAGGACCCAGATCTAACTGGTGTAAGCCATTTGCTAGTGGATGAAATTCATGAAAGAGGCATGAATGAGGACTTCCTTTTAATAATTTTGCATGACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - -gcatact
- - - - - - - - - - - - - - - - - - gggatgg
- - - - - - - - - - - - - - - - - - - - - - acacaca