1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...catgtatgttgtggtacttagctgtatgcatgttatccagttaaccttagtactgtgcagtttacacagccggcttgtttactgttgtttgtttgtgtagGGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAGGAGGCATGCAAGAATGCTAAGGTTCCACTTCTCCTGAGGTTGCAGCCTG
species | Vitis vinifera |
transcript | Vv08s0007g09010.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAA GGGGAGGAATGATAA-TTCTTGCACGATCAACTGCTACCCCACAAGEST: gi|34550413|gb|CF518631.1|CF518631
genomic: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGA-TGATAAATTCTTGCACGATCAACTGCTACCCCACAAG
EST: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAA GGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAGEST: gi|34550493|gb|CF518711.1|CF518711
genomic: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
EST: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAA GGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAGEST: gi|110719520|gb|EE094721.1|EE094721
genomic: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
EST: CCTGATTTCAAAGTTCAATGATGTATCTGGCC-CCATTCTAATTGATCAA GGGGAGGATGATAAATTCCTGCACGATCEST: gi|30303302|gb|CB980096.1|CB980096
genomic: CCTGATTTCAAAGTTCAATGATGTATCTG-CTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATAAATTCTTGCACGATC
EST: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTTTAATTGATCAA GGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCCCAAGTTTGAGEST: gi|349825963|gb|FQ415768.1|FQ415768
genomic: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
EST: CCTGATTTCAAAGTTCAATTGATGTGTCTGCTACCATTCTAATTGATCAA GGGGAGGAAGATAEST: gi|110367745|gb|EC931696.1|EC931696
genomic: CCTGATTTCAAAGTTCAAT-GATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATA
EST: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAA GGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAGEST: gi|110713210|gb|EE088932.1|EE088932
genomic: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
EST: CCTGATTTCAA-GTTCAATGATGTATCTGCCACCATTCNTA-TTGATCNA GGGGGAG-ATGATAA-TTCNTGCACGATCAACTGCTACCCEST: gi|110685290|gb|EE063541.1|EE063541
genomic: CCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTC-TAATTGATCAAgtaagctcaa ... gtttgtgtagGGGG-AGGATGATAAATTCTTGCACGATCAACTGCTACCC
EST: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAA GGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAGEST: gi|351015480|gb|FQ447309.1|FQ447309
genomic: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
EST: GCCCGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAA GGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAGEST: gi|46918518|gb|CN547847.1|CN547847
genomic: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
EST: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAA GGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAGEST: gi|110403744|gb|EC969476.1|EC969476
genomic: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
EST: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAA GGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAGEST: gi|110720121|gb|EE095776.1|EE095776
genomic: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
EST: GCCTGATTTCAA-GTTCAATGATGTATCTGCCAC-ATTCTAATTGATCA- GGGGAGGAAGATAA-TTCTTGCACGAT-AACTGGC-ACCC-ACAA-TTTGAEST: gi|351013248|gb|FQ424953.1|FQ424953
genomic: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATAAATTCTTGCACGATCAACTG-CTACCCCACAAGTTTGA
EST: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAA GGGGAGGATGATAAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAEST: gi|110384036|gb|EC948449.1|EC948449
genomic: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATAAA-TTCTTGCACGATCAACTGCTACCCCACAAGTTTGA
EST: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAA GGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAGEST: gi|30303234|gb|CB980028.1|CB980028
genomic: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
EST: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAA GGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAGEST: gi|110416702|gb|EC982699.1|EC982699
genomic: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
EST: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAA GGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAGEST: gi|30129940|gb|CB915279.1|CB915279
genomic: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
EST: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAA GGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAGEST: gi|26263619|gb|CA814682.1|CA814682
genomic: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
EST: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAA GGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAGEST: gi|110402055|gb|EC968688.1|EC968688
genomic: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
EST: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAA GGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAGEST: gi|352794409|gb|FQ481640.1|FQ481640
genomic: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
EST: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAA GGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCEST: gi|110691307|gb|EE069257.1|EE069257
genomic: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCC
EST: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAA GGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAGEST: gi|351040136|gb|FQ425222.1|FQ425222
genomic: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
EST: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAA GGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAGEST: gi|46918517|gb|CN547846.1|CN547846
genomic: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
EST: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAA GGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAGEST: gi|351027863|gb|FQ448433.1|FQ448433
genomic: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
EST: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAA GGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAGEST: gi|46919080|gb|CN548409.1|CN548409
genomic: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
EST: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAA GGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAGEST: gi|26260233|gb|CA811296.1|CA811296
genomic: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
EST: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAA GGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAGEST: gi|34319644|gb|CF372398.1|CF372398
genomic: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
EST: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAA GGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAGEST: gi|349824260|gb|FQ417647.1|FQ417647
genomic: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
EST: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAA GGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
genomic: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
cttagtactgtgcagtttacacagccggcttgtttactgttgtttgtttgtgtagGGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAGGAGGCATGCAAGAATGCTAAGGTTCCACTTCTCCTGAGGTTGCAGCCTG
tttgttt CT-rich tract
ttgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catgtatgttgtggtacttagctgtatgcatgttatccagttaaccttagtactgtgcagtttacacagccggcttgtttactgttgtttgtttgtgtagGGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAGGAGGCATGCAAGAATGCTAAGGTTCCACTTCTCCTGAGGTTGCAGCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
catgtat
- - - - ttgtggt
- - - - - - - - - - - -gtatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacagcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgttgt