Sequence
atgc intronic sequence ATGC exonic sequencegtatcatttattatgtatggttattgttgatttgtctcatccttgtttctgaattctgatataccttgtcagcatttcatgtctttaaactctaccaacataattggtgtttcttctttgatccactctgcagCTGTTCAATGAAATAAACAGCCGTGATATTGAGAAGATAAACATTTTTCGTGGTATGTTTGACAGCTGGATATTTATCATAGTCATGGTCTGCACAGTGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g08960.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA03G29010.1 (Glycine max), 3'ss of exon 7
-------------gtatcatttattatgtatggtt-attgttgatttgtctcatccttgt----ttctgaattctgatataccttgtcagcatttcatgtctttaaa---------------------ctctaccaacataattggtgtttcttctttgatccactctgc-agCTGTTCAATGAAATAAACAGCCGTGATATTGAGAAGATAAACATTTTTCGTGGTATGTTTGACAGCTGGATATTTATCATAGTCATGGTCTGCACAGTGG
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gtacactctccatgcaccatgtcctaattgttgtttatacttaatagactccaaacatgtgaaactctgaggatggatgctaaaaaataaaagttcaaaccttaaaaaaaatggtacggtacattgttttccatttatttagccagctgttttccatt--tctattcttccagGTGTTTAATGAGATAAACAGCAGAGATATTGACAAGATAAACATATTCAGAGGCATGTTTGACAGCTGGATATTTATGGCGATAATTTTCGCCACCGCTG
upper sequence: Vv08s0007g08960.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA19G31770.1 (Glycine max), 3'ss of exon 4
gtatcatttattatgtatg-gttattgttgatttgtctcatccttgtttctgaattctgatataccttgtcagcatttcatgtctttaaa------ctctaccaacataattggtgtttcttctttgatccactctgc-agCTGTTCAATGAAATAAACAGCCGTGATATTGAGAAGATAAACATTTTTCGTGGTATGTTTGACAGCTGGATATTTATCATAGTCATGGTCTGCACAGTGG
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-----gtacactctgcatgcatcatgtcctaattgttgtttatacttaatagactccaaacatgtaaaataaaagttcaaacctgttaaaaaatggttccatttatatacctagctgttttccatt--tctactcttccagGTGTTTAATGAGATAAACAGCAGAGATATTGATAAGATAAACATATTCAGAGGCATGTTTGACAGCCGGATATTTTTGGCGATAATTTTCGCCACCGTGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgtctttaaactctaccaacataattggtgtttcttctttgatccactctgcagCTGTTCAATGAAATAAACAGCCGTGATATTGAGAAGATAAACATTTTTCGTGGTATGTTTGACAGCTGGATATTTATCATAGTCATGGTCTGCACAGTGG
ctttgat putative branch site (score: 5)
tttcttctttgatcc CT-rich tract
aacataatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatcatttattatgtatggttattgttgatttgtctcatccttgtttctgaattctgatataccttgtcagcatttcatgtctttaaactctaccaacataattggtgtttcttctttgatccactctgcagCTGTTCAATGAAATAAACAGCCGTGATATTGAGAAGATAAACATTTTTCGTGGTATGTTTGACAGCTGGATATTTATCATAGTCATGGTCTGCACAGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA