1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...agatgaaatatccaagtatctgttttctttttactcggttgtgtgttaattttgcatgtatatttttaaaaatgtttgaagcttcccttgttgctttcagGGAGCAAATACAAGATTTCCTGCTATCCGATAGCGAAGATGGAACCTGAACTCAAAACTCTTAAGGCTTGTCCCATTTCGGATGTAGGTTTTCTTCTACG
species | Vitis vinifera |
transcript | Vv08s0007g08560.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTTGTTGTTCAAGCGAAGGACAGAAGCTTTAGTATGCAGAGACAGCTAAG GGAGCAAATACAAGATTTCCTGCTATCCGATAGCGAAGATGGAACCTGAACEST: gi|71876123|gb|DT025178.1|DT025178
genomic: TTTGTTGTTCAAGCGAAGGACAGAAGCTTTAGTATGCAGAGACAGCTAAGgtgataattt ... ttgctttcagGGAGCAAATACAAGATTTCCTGCTATCCGATAGCGAAGATGGAACCTGAAC
EST: TTTGTTGTTCAAGCGAAGGACAGAAGCTTTAGTATGCAGAGACAGCTAAG GGAGCAAATACAAGATTTCCTGCTATCCGATAGCGAAGATGGAACCTGAAC
genomic: TTTGTTGTTCAAGCGAAGGACAGAAGCTTTAGTATGCAGAGACAGCTAAGgtgataattt ... ttgctttcagGGAGCAAATACAAGATTTCCTGCTATCCGATAGCGAAGATGGAACCTGAAC
ttaattttgcatgtatatttttaaaaatgtttgaagcttcccttgttgctttcagGGAGCAAATACAAGATTTCCTGCTATCCGATAGCGAAGATGGAACCTGAACTCAAAACTCTTAAGGCTTGTCCCATTTCGGATGTAGGTTTTCTTCTACG
tgttaat putative branch site (score: 3)
cttcccttgttgcttt putative PPT
tttgcatgtatatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agatgaaatatccaagtatctgttttctttttactcggttgtgtgttaattttgcatgtatatttttaaaaatgtttgaagcttcccttgttgctttcagGGAGCAAATACAAGATTTCCTGCTATCCGATAGCGAAGATGGAACCTGAACTCAAAACTCTTAAGGCTTGTCCCATTTCGGATGTAGGTTTTCTTCTACG
- -tgaaata
- - - - - -ccaagta
- - - - - - - - - - - - - - - - - - ggttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaaaat