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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcatctctccaattatcttatagtatcaagtatagaattctcagtagagtagattaagacagttattagtgtgatgaaactgtgcactcggctgcctcttgttggaccaggaactttaattttcccccaaatctgcatatatgtaggagcctgacattggtataatcttttgcagGTATAATTGGGCTTCAATCCTCGGCCTAGGGTCAATTTCTTTTATCCATCTGGAAATACTGGAAAATAATCAGTGTAATGGAAATACTGGAAAATAATGT

Basic information

species Vitis vinifera
transcript Vv08s0007g07280.t01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349825158|gb|FQ415705.1|FQ415705
EST:     ACATGAACTCAGCAAGACAACTGGGAATGCTGGTGGCAGAGTTGGATGTG                         GTATCATTGGGCTTCAATCCTCGGCCTAGGGTCAATTTCTTTTATCCATCT
genomic: ACATGAACTCAGCAAAACAACTGGGAATGCTGGTGGCAGAGTTGGATGTGgtaatcatct ... tcttttgcagGTATAATTGGGCTTCAATCCTCGGCCTAGGGTCAATTTCTTTTATCCATCT
EST: gi|26263916|gb|CA814979.1|CA814979
EST:     ACATGAACTCAGCAAAACAACTGGGAATGCTGGTGGCAGAGTTGGATGTG                         GTATAATTGGGCTTCAATCCTCGGCCTAGGGTCAATTTCTTTTATCCATCT
genomic: ACATGAACTCAGCAAAACAACTGGGAATGCTGGTGGCAGAGTTGGATGTGgtaatcatct ... tcttttgcagGTATAATTGGGCTTCAATCCTCGGCCTAGGGTCAATTTCTTTTATCCATCT
EST: gi|71870823|gb|DT019878.1|DT019878
EST:     ACATGAACTCAGCAAAACAACTGGGAATGCTGGTGGCAGAGTTGGATGTG                         GTATAATTGGGCTTCAATCCTCGGGCTAGGGTCAATTTCTTTTATCCATCT
genomic: ACATGAACTCAGCAAAACAACTGGGAATGCTGGTGGCAGAGTTGGATGTGgtaatcatct ... tcttttgcagGTATAATTGGGCTTCAATCCTCGGCCTAGGGTCAATTTCTTTTATCCATCT
EST: gi|110429247|gb|EC995737.1|EC995737
EST:     ACATGAACTCAGCAAGACAACTGGGAATGCTGGTGGCAGAGTTGGATGTG                         GTATAATTGGGCTTCAATCCTCGGCCTAGGGTCAATTTCTTTTATCCATCT
genomic: ACATGAACTCAGCAAAACAACTGGGAATGCTGGTGGCAGAGTTGGATGTGgtaatcatct ... tcttttgcagGTATAATTGGGCTTCAATCCTCGGCCTAGGGTCAATTTCTTTTATCCATCT
EST: gi|32456166|gb|CD797340.1|CD797340
EST:     ACATGAACTCAGCAAAACAACTGGGAATGCTGGTGGCAGAGTTGGATGTG                         GTATAATTGGGCTTCAATCCTCGGCCTAGGGTCAATTTCTTTTATCCATCT
genomic: ACATGAACTCAGCAAAACAACTGGGAATGCTGGTGGCAGAGTTGGATGTGgtaatcatct ... tcttttgcagGTATAATTGGGCTTCAATCCTCGGCCTAGGGTCAATTTCTTTTATCCATCT
EST: gi|351040393|gb|FQ434526.1|FQ434526
EST:     ACATGAACTCAGCAAAACAACTGGGAATGCTGGTGGCAGAGTTGGATGTG                         GTATAATTGGGCTTCAATCCTCGGCCTAGGGTCAATTTCTTTTATCCATCT
genomic: ACATGAACTCAGCAAAACAACTGGGAATGCTGGTGGCAGAGTTGGATGTGgtaatcatct ... tcttttgcagGTATAATTGGGCTTCAATCCTCGGCCTAGGGTCAATTTCTTTTATCCATCT
EST: gi|71867553|gb|DT016608.1|DT016608
EST:     ACATGAACTCAGCAAGACAACTGGGAATGCTGGTGGCAGAGTTGGATGTG                         GTATCATTGGGCTTCAATCCTCGGCCTAGGGTCAATTTCTTTTATCCATCT
genomic: ACATGAACTCAGCAAAACAACTGGGAATGCTGGTGGCAGAGTTGGATGTGgtaatcatct ... tcttttgcagGTATAATTGGGCTTCAATCCTCGGCCTAGGGTCAATTTCTTTTATCCATCT
EST: gi|110389316|gb|EC954144.1|EC954144
EST:     ACATGAACTCAGCAAGACAACTGGGAATGCTGGTGGCAGAGTTGGATGTG                         GTATCATTGGGCTTCAATCCTCGGCCTAGGGTCAATTTCTTTTATCCATCT
genomic: ACATGAACTCAGCAAAACAACTGGGAATGCTGGTGGCAGAGTTGGATGTGgtaatcatct ... tcttttgcagGTATAATTGGGCTTCAATCCTCGGCCTAGGGTCAATTTCTTTTATCCATCT
EST: gi|110414987|gb|EC980855.1|EC980855
EST:     ACATGAACTCAGCAAGACAACTGGGAATGCTGGTGGCAGAGTTGGATGTG                         GTATAATTGGGCTTCAATCCTCGGCCTAGGGTCAATTTCTTTTATCCATCT
genomic: ACATGAACTCAGCAAAACAACTGGGAATGCTGGTGGCAGAGTTGGATGTGgtaatcatct ... tcttttgcagGTATAATTGGGCTTCAATCCTCGGCCTAGGGTCAATTTCTTTTATCCATCT
EST: gi|37184575|gb|CF603929.1|CF603929
EST:     ACATGAACTCAGCAAGACAACTGGGAATGCTGGTGGCAGAGTTGGATGTG                         GTATCATTGGGCTTCAATCCTCGGCCTAGGGTCAATTTCTTTTATCCATCT
genomic: ACATGAACTCAGCAAAACAACTGGGAATGCTGGTGGCAGAGTTGGATGTGgtaatcatct ... tcttttgcagGTATAATTGGGCTTCAATCCTCGGCCTAGGGTCAATTTCTTTTATCCATCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcccccaaatctgcatatatgtaggagcctgacattggtataatcttttgcagGTATAATTGGGCTTCAATCCTCGGCCTAGGGTCAATTTCTTTTATCCATCTGGAAATACTGGAAAATAATCAGTGTAATGGAAATACTGGAAAATAATGT
                            gcctgac  putative branch site (score: 3)
                                             tcttttgc  putative PPT
                                        tataatctttt  TA-rich tract