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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacagaagctctctctctcctctcccctcacccttcccctccccatcctcaatgcgccatataacattgttgctggcgtgtgtggcatgttcatatggttaactagacttgcatgtatttatattatcttgtgctgttttttattttcttgttggtagctcaatcttaagttggtgtccatcaattgtttctcagTGCAGGTTTGATCCTGGCATCCTGGTTTTTGACCCTTGG

Basic information

species Vitis vinifera
transcript Vv08s0007g06550.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g06550.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA03G30140.1 (Glycine max), 3'ss of exon 6
gtacagaagctctctctctcctctcccctcacccttcccctccccatcctcaatgcgccatataacattgttgctggcgtgtgtggcatgttcatatggttaactagacttgcatgtatttatattatcttgtgctgttt-----tttattttcttgttggtagctcaatcttaagttggtgtccatcaattgtttctcagTGCAGGTTTGATCCTGGCATCCTGGTTTTTGACCCTTGG
                                                                        |  |   |   |||    || || |   | | | | | ||  | |  |  || |  ||     || |      |||  | || | |    |  | ||| || || |    | | ||||| |||||||||||||||| ||||  ||||||||||||| ||| |  ||||
------------------------------------------------------------------------gtagatatacttgg---atttatgtatgtcattgggcatgtgtatgatagtaatgcctatcaatgctaatgcatttcctatcctctgtccaaattaatattgagcttacatacttcaatggtttctcagTGCAGGTCTGATATTGGCATCCTGGTTATTGTCAATTGG

upper sequence: Vv08s0007g06550.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA19G33030.1 (Glycine max), 3'ss of exon 6
gtacagaagctctctctctcctctcccctcacccttcccctccccatcctcaatgcgccatataacattgttgctggcgtgtgtggcatgttcatatggttaactagacttgcatgtatttatattatcttgtgctgttttttattttcttgttggtagctcaatcttaagttggtgtccatcaattgtttctcagTGCAGGTTTGATCCTGGCATCCTGGTTTTTGACCCTTGG
                                                                  |    | || |  | | ||  |||||  |  |      ||   | | |      |||     ||  |||  |||  |||  ||| ||   ||  | ||| || |  |    | | ||||| |||||||||||||||| ||||  ||||||||||||| ||| |  ||||
----------------------------------------------------------------gtagatatacttggatttatg-tatgttgttgggcacgtgtaagatagtaacaccctatcaatgctaatgc-atttcctatcctct-gt--ataaattaatattgaacttacatacttcaatggtttctcagTGCAGGTCTGATATTGGCATCCTGGTTATTGTCAATTGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattttcttgttggtagctcaatcttaagttggtgtccatcaattgtttctcagTGCAGGTTTGATCCTGGCATCCTGGTTTTTGACCCTTGG
                                            ttgtttctc  CT-rich tract
                     aatcttaa  TA-rich tract