Sequence
atgc intronic sequence ATGC exonic sequencegtaagtactattattcttgcactcctatagttatttcaaaatacctggtgaccatcctgaggatataacaagtctgcaagctgcttctaacttcaagctcctgtagGATGAGAGAAAAATTTTGGACCGGGAACTATCTCGTGCAAAGGTTACTGCAAATCGAGTTGCTGTTGTTGTTGCAAATGAATGGAAAGATGCCAATGACA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g05140.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA03G28310.1 (Glycine max), 3'ss of exon 7
gtaagtactattattcttgcactcctatagttatttcaaaatacctggtgaccatcctgaggatataacaagt-ctgcaagctgcttctaacttc---------aagctcctgtagGATGAGAGAAAAATTTTGGACCGGGAACTATCTCGTGCAAAGGTTACTGCAAATCGAGTTGCTGTTGTTGTTGCAAATGAATGGAAAGATGCCAATGACA
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gtaaatattaacattctttgg-----ataatcatcatata-tac-tggttgttgttttgagtctgttgcagatgctcttggctgcttataagttctaacgatcaaagttgacatagGAGGAAAGGAAAATTTTGGAGCGGGAAGTAGCTCGTGCCAAAGTTACTGCAAACAGGGTTGCGACTGTAGTTGCAAATGAGTGGAAAGATGCTAATGATA
upper sequence: Vv08s0007g05140.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA19G31040.1 (Glycine max), 3'ss of exon 6
gtaagtactattattcttgcactcctatagttatttcaaaatacctggtgaccatcctgaggatataacaagt-ctgcaagctgcttctaacttcaagctcc---------tgtagGATGAGAGAAAAATTTTGGACCGGGAACTATCTCGTGCAAAGGTTACTGCAAATCGAGTTGCTGTTGTTGTTGCAAATGAATGGAAAGATGCCAATGACA
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gtaaatattaaccttctt-----cagataatcatcatata-tac-tgtttgttgttttgagtctattgtagatgctcttggctgcttataagttctaaccttcaaaattgacatagGATGAAAGGAAAATTTTGGAGCGGGAAGTAGCACGTGCCAAAGTTACTGCGAACAGGGTTGCGACTGTAGTTGCAAATGAGTGGAAAGATGCTAATGATA
upper sequence: Vv08s0007g05140.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: PP1S31_77V6.1 (Physcomitrella patens), 3'ss of exon 6
------------------------------------------------gtaagtactattattcttgcactcctatagttatttcaaaatacctggtgaccatcctgaggatataacaagtctg--caagctgcttctaacttcaagctcctgtagGATGAGAGAAAAATTTTGGACCGGGAACTATCTCGTGCAAAGGTTACTGCAAATCGAGTTGCTGTTGTTGTTGCAAATGAATGGAAAGATGCCAATGACA
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gtaaaatttatggttttcggggttgaaaatattctccttgtgaatgccgcgagaagttattacgttgcgttga-atgatttcttgaagattctttgctatggttatt-gcttatattaagtcttatctggatgacgcacatttgaaac------agGAAGGGAAGAAGACATTGGAGAGGGAATTGGCGCGGGCGAAAATTACAGCTAACAGAGTTGCAGTTGTTGTTGCAAATGAGTGGAAGGATGCAAATGACAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110384051|gb|EC948465.1|EC948465EST: CTGCAGCAAATGCTGTGCGTGATTACCGGCGGAAAGTGCAAGAAATGAAT GATGAGAGAAAAATTTTGGACCGGGAACTATCTCGTGCAAAGGTTACTGCA
genomic: CTGCAGCAAATGCTGTGCGTGATTACCGGCGGAAAGTGCAAGAAATGAATgtaagtacta ... gctcctgtagGATGAGAGAAAAATTTTGGACCGGGAACTATCTCGTGCAAAGGTTACTGCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ccatcctgaggatataacaagtctgcaagctgcttctaacttcaagctcctgtagGATGAGAGAAAAATTTTGGACCGGGAACTATCTCGTGCAAAGGTTACTGCAAATCGAGTTGCTGTTGTTGTTGCAAATGAATGGAAAGATGCCAATGACA
ttctaac putative branch site (score: 1)
ctcctgt putative PPT
atataacaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtactattattcttgcactcctatagttatttcaaaatacctggtgaccatcctgaggatataacaagtctgcaagctgcttctaacttcaagctcctgtagGATGAGAGAAAAATTTTGGACCGGGAACTATCTCGTGCAAAGGTTACTGCAAATCGAGTTGCTGTTGTTGTTGCAAATGAATGGAAAGATGCCAATGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG