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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgactcaacctcaaacctctccaggttgcaatgctctcagattcttcgaaactaataagttgtttgtcatttatctgttggcgagtcagCAAATATTATGCTCCAATCTGAGGTGGAAACGAATTCTGGTGCTAGTAACTGTATGGGTTATTTTCCTACTTCTTCAGATCTTCAAG

Basic information

species Vitis vinifera
transcript Vv08s0007g04230.t01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110727350|gb|EE104013.1|EE104013
EST:     TCGATGCAGAGTATGATCCTTTGATTCCCAACGAGGAAAAATCATGGATT                         CAAATATTATGCTCCAATCTGAGGTGGAAACGAATTCTGGTGCTAGTAACT
genomic: TCGATGCAGAGTATGATCCTTTGATTCCCAACGAGGAAAAATCATGGATTgtaagtgact ... ggcgagtcagCAAATATTATGCTCCAATCTGAGGTGGAAACGAATTCTGGTGCTAGTAACT
EST: gi|110718237|gb|EE094838.1|EE094838
EST:     TCGATGCAGAGTATGATCCTTTGATTCCCAACGAGGAAAAATCATGGATT                         CAAATATTATGCTCCAATCTGAGGTGGAAACGAATTCTGGTGCTAGTAACT
genomic: TCGATGCAGAGTATGATCCTTTGATTCCCAACGAGGAAAAATCATGGATTgtaagtgact ... ggcgagtcagCAAATATTATGCTCCAATCTGAGGTGGAAACGAATTCTGGTGCTAGTAACT
EST: gi|110720724|gb|EE096897.1|EE096897
EST:     TCGATGCAGAGTATGATCCTTTGATTCCCAACGAGGAAAAATCATGGATT                         CAAATATTATGCTCCAATCTGAGGTGGAAACGAATTCTGGTGCTAGTAACT
genomic: TCGATGCAGAGTATGATCCTTTGATTCCCAACGAGGAAAAATCATGGATTgtaagtgact ... ggcgagtcagCAAATATTATGCTCCAATCTGAGGTGGAAACGAATTCTGGTGCTAGTAACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctcagattcttcgaaactaataagttgtttgtcatttatctgttggcgagtcagCAAATATTATGCTCCAATCTGAGGTGGAAACGAATTCTGGTGCTAGTAACTGTATGGGTTATTTTCCTACTTCTTCAGATCTTCAAG
               aactaat  putative branch site (score: 2)
              aaactaataa  TA-rich tract