Sequence
atgc intronic sequence ATGC exonic sequencegtcagtgttgtttcttgacctccacatttgaaatgaaaatttagaacctaaaatctaggtgattaactctccctttttcttgttaatgtttactgcagAAAGTGTCTTTGTGGAAGAAGGTCCATGTGATTTACAGCTTCTTCATAGTTAGGAAGCTTGTAGCTCACATTGTCACCTTTGTCTTTTACTGTGTGGTAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g03990.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA03G34800.1 (Glycine max), 3'ss of exon 6
----gtcagtgttgtttcttgacctccacatttgaaatgaaaatttagaaccta---aaatctaggtgattaactct--ccctttttcttgt-----taatgtttactgcagAAAGTGTCTTTGTGGAAGAAGGTCCATGTGATTTACAGCTTCTTCATAGTTAGGAAGCTTGTAGCTCACATTGTCACCTTTGTCTTTTACTGTGTGGTAC
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gtaagtttattttgttttcttgaattatcatttatcaggaatatgcaggaacaagacaaactatgttgactgcttatgatccaaattcatgtgtatgttatgtccattgcagAAAGTGTCATTGTGGAAGAAGATACATGTGATTTACAGCTTCTTCTTTGTTCGGAAGGTCGTAGCACACATCAACACGTTTGTGTTTTATTGCATTGTAT
upper sequence: Vv08s0007g03990.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA19G37480.1 (Glycine max), 3'ss of exon 6
------------gtcagtgttgtttcttgacctccacatttgaaatgaaaatttagaacctaaaatctaggtgattaactctccctttttct-tgt---taatgtttactgcagAAAGTGTCTTTGTGGAAGAAGGTCCATGTGATTTACAGCTTCTTCATAGTTAGGAAGCTTGTAGCTCACATTGTCACCTTTGTCTTTTACTGTGTGGTAC
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gtatataagtttatttatttttttccttgaattatcaggaatatatgcaggagcaggacaaaatttgttgactacttttgctccaaattcatatgtatgttatgtccattgcagAAAGTGTCATTGTGGAAGAAGATACATGTGATTTACAGCTTCTTCTTTGTTCGGAAGGTCGTAGCACACATAAACACGTTTGTGTTTTATTGCATTGTATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34543461|gb|CF511693.1|CF511693EST: GCCCTGCTAATCTTTTCAGGAAAATGGTAATGGAGATTGTAAGAAACAAG AAAGTGTCTCTGTGGAAGAAGGTCCATGTGATTTACAGCTTCTTCATAGTT
genomic: GCCCTGCTAATCTTTTCAGGAAAATGGTAATGGAGATTGTAAGAAACAAGgtcagtgttg ... tttactgcagAAAGTGTCTTTGTGGAAGAAGGTCCATGTGATTTACAGCTTCTTCATAGTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaacctaaaatctaggtgattaactctccctttttcttgttaatgtttactgcagAAAGTGTCTTTGTGGAAGAAGGTCCATGTGATTTACAGCTTCTTCATAGTTAGGAAGCTTGTAGCTCACATTGTCACCTTTGTCTTTTACTGTGTGGTAC
tttttcttgttaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtcagtgttgtttcttgacctccacatttgaaatgaaaatttagaacctaaaatctaggtgattaactctccctttttcttgttaatgtttactgcagAAAGTGTCTTTGTGGAAGAAGGTCCATGTGATTTACAGCTTCTTCATAGTTAGGAAGCTTGTAGCTCACATTGTCACCTTTGTCTTTTACTGTGTGGTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA