Sequence
atgc intronic sequence ATGC exonic sequence...gcactttactttttttatgttgtgcttggaattatataccagttcaatatctttaattaatctaacacaataataaaattcattgattattcatgaacagAATGAATTTGGTGTGTGGGAGATCTTTTTGCCAAACAATGCAGATGGTTCACCTCCAATCCCCCATGGCTCTCGAGTGAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g03750.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G032628_T01 (Zea mays), 3'ss of exon 6
--gcactttactttttttatgttgtgcttggaattatataccagttcaatatctttaattaatctaacacaataataaaattcattgattattcatgaacagAATGAATTTGGTGTGTGGGAGATCTTTTTGCCAAACAATGCAGATGGTTCACCTCCAATCCCCCATGGCTCTCGAGTGAAG
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taatataataatgatacacaactctcttgtatgttagcgaaaaaaaaagaaaacttactgatcctcgcatagtctaaatcgaggtactttgttcttg--cagAATGAGTTTGGTGTTTGGGAAATTTTTCTGCCTAACAATGCAGATGGTACATCACCTATTCCTCATGGATCTCGTGTAAAG
upper sequence: Vv08s0007g03750.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT5G03650.1 (Arabidopsis thaliana), 3'ss of exon 6
-----gcactttactttttttatgttg--tgcttggaatta-tataccagttcaatatctttaattaatctaacacaataataaaattcattgattat-tcatgaacagAATGAATTTGGTGTGTGGGAGATCTTTTTGCCAAACAATGCAGATGGTTCACCTCCAATCCCCCATGGCTCTCGAGTGAAG
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gtatggcctactgactactttgcgtaaatttcttatgcttggtatattcatttgagatttgaaatctactgaattctgaccaatgattctctcatcaaatctttgacagAATGAATTTGGTGTTTGGGAGATCTTTTTGCCCAACAACACTGATGGTTCGCCTGCAATTCCTCATGGCTCACGTGTAAAG
upper sequence: Vv08s0007g03750.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT2G36390.1 (Arabidopsis thaliana), 3'ss of exon 6
------------------------------------------------------------------------------------gcactttactttttttatgttg-----tgcttggaattatataccagttcaatatctttaattaatctaacacaataataaaattcattgattattcatgaacagAATGAATTTGGTGTGTGGGAGATCTTTTTGCCAAACAATGCAGATGGTTCACCTCCAATCCCCCATGGCTCTCGAGTGAAG
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gtatgctcacacactctaatttgtgatctattgtttaatcttccgtcttagcttataatttggctagaagttaaatttttacttgaaccttaaatgatacttgttggcgcatgctttgctctgt-tattattctgttcctttctggaattctgatctaagactgtcttacaactgatatt--tgagcagAACGACTTTGGTGTGTGGGAAATATTTCTGCCAAATAATGCTGATGGCTCACCAGCAATTCCCCATGGCTCCCGTGTGAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatatctttaattaatctaacacaataataaaattcattgattattcatgaacagAATGAATTTGGTGTGTGGGAGATCTTTTTGCCAAACAATGCAGATGGTTCACCTCCAATCCCCCATGGCTCTCGAGTGAAG
tttaattaatctaaca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gcactttactttttttatgttgtgcttggaattatataccagttcaatatctttaattaatctaacacaataataaaattcattgattattcatgaacagAATGAATTTGGTGTGTGGGAGATCTTTTTGCCAAACAATGCAGATGGTTCACCTCCAATCCCCCATGGCTCTCGAGTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - -gtgcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctaacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaaa