1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...caaatgcacaccagctatgatgttccaaagagtaaatcttacaacatcattcattttggtgtctctgactagagaaaatcccccacttctatatctgcagGCAGCTATGAACATCGGAAGTAACACTTCAAATGTGGCAAATTCAGGACAATCTTATCAGCCGTCTATAACTGTTCCTTCATTTTCCCACGCACCAAGTG
species | Vitis vinifera |
transcript | Vv08s0007g02870.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTGCCACCACAGATGCTCCTGAAGATTCTACATTTGTAAACTTCTTTGGT GCAGCTATGAACATCGGAAGTAACACTTCAAATGTGGCAAATTCAGGACAAEST: gi|161713925|gb|FC062591.1|FC062591
genomic: CTGCCACCACAGATGCTCCTGAAGATTCTACATTTGTAAACTTCTTTGGTgtatgtactc ... atatctgcagGCAGCTATGAACATCGGAAGTAACACTTCAAATGTGGCAAATTCAGGACAA
EST: CTGCCACCACAGATGCTCCTGAAGATTCTACATTTGTAAACTTCTTTGGT GCAGCTATGAACATCGGAAGTAACACTTCAAATGTGGCAAATTCAGGACAA
genomic: CTGCCACCACAGATGCTCCTGAAGATTCTACATTTGTAAACTTCTTTGGTgtatgtactc ... atatctgcagGCAGCTATGAACATCGGAAGTAACACTTCAAATGTGGCAAATTCAGGACAA
atcattcattttggtgtctctgactagagaaaatcccccacttctatatctgcagGCAGCTATGAACATCGGAAGTAACACTTCAAATGTGGCAAATTCAGGACAATCTTATCAGCCGTCTATAACTGTTCCTTCATTTTCCCACGCACCAAGTG
ctctgac putative branch site (score: 3)
tcccccacttctat putative PPT
ttctatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaatgcacaccagctatgatgttccaaagagtaaatcttacaacatcattcattttggtgtctctgactagagaaaatcccccacttctatatctgcagGCAGCTATGAACATCGGAAGTAACACTTCAAATGTGGCAAATTCAGGACAATCTTATCAGCCGTCTATAACTGTTCCTTCATTTTCCCACGCACCAAGTG
- - - cacacca
- - - - - - -gctatga
- - - - - - - - - - - - ccaaaga
- - - - - - - - - - - - - - - - - - - - -caacatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagaaaa