1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttctgtcctcctgaattttcttactttaagttgttgactcttttgcatcaagtttagaaatatctgaaagttgaagcttctctcacaagtgtcacaactatgtgaaaaaaagaagaaaggaatgaccaccacttctcttttgtctcatacagGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAAATACGTGGTTATCTTGATCTTGTGGTTGATGGAAAGCTTCCTCTAAATC
species | Vitis vinifera |
transcript | Vv08s0007g01980.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAG GTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAAEST: gi|161713904|gb|FC062870.1|FC062870
genomic: CTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
EST: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAG GTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGACAGAAEST: gi|32245274|gb|CD711093.1|CD711093
genomic: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
EST: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAG GTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAAEST: gi|33406522|gb|CF212149.1|CF212149
genomic: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
EST: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAG GTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAAEST: gi|110689439|gb|EE065663.1|EE065663
genomic: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
EST: ACTTGCTTANGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAA GTCACTGGAAAACTAGCAGCCTTGGAAGG-TTTGGATGCACGACTGANAGAEST: gi|110409702|gb|EC975372.1|EC975372
genomic: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTG-AAGGGTTTGGATGCACGACTGAGAGA
EST: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAG GTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAAEST: gi|110380658|gb|EC945941.1|EC945941
genomic: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
EST: CATTAGCACTCTTGCAACAGAG GTCACTGGAAAACTAGCAGCC-TGAAAGGGTTTGGATGCACGACTGAGAGAEST: gi|110697690|gb|EE074900.1|EE074900
genomic: CATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTG-AAGGGTTTGGATGCACGACTGAGAGA
EST: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAG GTCACTGGAAAACTAGCAGCCTTGGAAGGGTTTGGATGCACGACTGAGAGAEST: gi|33406800|gb|CF212427.1|CF212427
genomic: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTG-AAGGGTTTGGATGCACGACTGAGAGA
EST: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAG GTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAAEST: gi|26263205|gb|CA814268.1|CA814268
genomic: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
EST: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAG GTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAAEST: gi|30297109|gb|CB973903.1|CB973903
genomic: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
EST: CTTGCTTAGGGATGTGAAGGATACAACCATT-GANACTCTTGCAACAGAG GTCACTGGAAAACTAGCAGCCTTGEST: gi|110418075|gb|EC984190.1|EC984190
genomic: CTTGCTTAGGGATGTGAAGGATACAACCATTAGC-ACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTG
EST: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAG GTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAAEST: gi|33409710|gb|CF215337.1|CF215337
genomic: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
EST: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAG GTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAAEST: gi|110713466|gb|EE089412.1|EE089412
genomic: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
EST: CTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGGCA-CAGAA GTCACTGGAAAACTAGCAGCCTTGAAGGEST: gi|110711679|gb|EE088432.1|EE088432
genomic: CTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTG-CAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTGAAGG
EST: ACTTGCTTANGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAG GTCACTGGAAAACTAGCAGCCTTGAAEST: gi|110687327|gb|EE064641.1|EE064641
genomic: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTGAA
EST: ACTTGCTTANGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAG GTCACTGGAAAACTAGCAGCCTTGGAGGGTTTGGATGCACGACTGAGAGAAEST: gi|30296907|gb|CB973701.1|CB973701
genomic: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
EST: TGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAG GTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAAEST: gi|110409249|gb|EC974909.1|EC974909
genomic: TGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
EST: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAG GTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAAEST: gi|110718297|gb|EE094970.1|EE094970
genomic: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
EST: ACTTGCTTANGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAG GTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGANAGAAEST: gi|30321841|gb|CD005103.1|CD005103
genomic: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
EST: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAG GTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAAEST: gi|110387831|gb|EC952529.1|EC952529
genomic: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
EST: ATTAGCACTCTTGCAACAGAG GTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAAEST: gi|110380016|gb|EC945251.1|EC945251
genomic: ATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
EST: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAG GTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAAEST: gi|29783602|gb|CB349901.2|CB349901
genomic: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
EST: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAG GTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCA-GATCTGAGAGAEST: gi|110732758|gb|EE108326.1|EE108326
genomic: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGA-CTGAGAGA
EST: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAG GTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAAEST: gi|30124736|gb|CB910075.1|CB910075
genomic: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
EST: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAG GTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAAEST: gi|110690336|gb|EE067344.1|EE067344
genomic: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
EST: ACTTGCTTAGGGATGTGAAGGATACAACCATTANCACTCTTGCAACAGAG GTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGANAGAAEST: gi|33406603|gb|CF212230.1|CF212230
genomic: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
EST: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAG GTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAAEST: gi|110396200|gb|EC961881.1|EC961881
genomic: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
EST: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAG GTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAAEST: gi|110401013|gb|EC967604.1|EC967604
genomic: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
EST: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAG GTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAAEST: gi|161721407|gb|FC070435.1|FC070435
genomic: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
EST: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAG GTCACTGGAAAACTAGCAGCCTTEST: gi|110712994|gb|EE088527.1|EE088527
genomic: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTT
EST: ACTTGCTTANGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAG GTCACTGGGAAACTANCAGCCTTGAAGGGTTTGGATGCACGACTGANAGAA
genomic: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
ctatgtgaaaaaaagaagaaaggaatgaccaccacttctcttttgtctcatacagGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAAATACGTGGTTATCTTGATCTTGTGGTTGATGGAAAGCTTCCTCTAAATC
ccaccacttctctttt CT-rich tract
aaaaaaagaagaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttctgtcctcctgaattttcttactttaagttgttgactcttttgcatcaagtttagaaatatctgaaagttgaagcttctctcacaagtgtcacaactatgtgaaaaaaagaagaaaggaatgaccaccacttctcttttgtctcatacagGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAAATACGTGGTTATCTTGATCTTGTGGTTGATGGAAAGCTTCCTCTAAATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA