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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaggcaacatatattgttttcaacttcatggtttatgcttctgtttctaccagcagtggtttgtttttcttaagttgatcagtttctgtgatgatttgcagTTACCGGGCTTCATGATATGGATGAATTTGTCCAGTCCCAACTTATTCTTGCG

Basic information

species Vitis vinifera
transcript Vv08s0007g01960.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g01960.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: LOC_Os06g49140.1 (Oryza sativa), 3'ss of exon 6
gttaggcaacata-tattgttttcaactt-catggtttatgcttctgtttctaccagcagtggtttgtttttcttaagttgatcagtttctgtgatgatttgcagTTACCGGGCTTCATGATATGGATGAATTTGTCCAGTCCCAACTTATTCTTGCG
     | || ||| |  |||     |||| |||    | |  || ||    ||            ||| | | | | | | || |  | || ||     || |||||||||| |||||||||||||| || ||||| |||||||| ||||| || |||
-----gtaagatagtgatgtcccttacttgcatcccatttatttatggcatta-----gactacatgtatgtttcatgcttattatgtgctttgggttattacagTTACCGGCCTTCATGATATGGACGAGTTTGTTCAGTCCCAGCTTATACTGGCG

upper sequence: Vv08s0007g01960.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G083745_T03 (Zea mays), 3'ss of exon 6
gttaggcaacatat-attgttttcaacttcatggtttatgcttctgtttctaccagcagtggtttgtttttcttaagttgatcagtttctgtgatgatttgcagTTACCGGGCTTCATGATATGGATGAATTTGTCCAGTCCCAACTTATTCTTGCG
|| ||  | ||||| | ||      ||||  | ||||    | |  ||| || ||  ||||    |  || | | | |  ||   | | |  | ||| |  |||||||||| |||||||||||||| |||||||| |||||||| ||||| || |||
gtaagatatcatatcagtgcaagagacttggttgttt----tgcaatttttatcactagtga---ggattacatgatt--attgctcttttgggtgact-acagTTACCGGACTTCATGATATGGACGAATTTGTTCAGTCCCAGCTTATACTCGCG

upper sequence: Vv08s0007g01960.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA15G07970.4 (Glycine max), 3'ss of exon 7
gttaggcaacatatattgttttcaacttca--tggtttatgcttctgtttctaccagcagtggtttgtttttc-ttaagttgatcagtttctgtgatgatttgcagTTACCGGGCTTCATGATATGGATGAATTTGTCCAGTCCCAACTTATTCTTGCG
  |    || |  | || ||||| |  |||  ||    |   |  |      ||      |  ||||||| |  | |||      ||||||  |     ||||||||||| || |||||||| |||||||||||||| || ||||||||  | ||||| 
--tgtagaaaaactcttcttttccatgtcaattgcaaaacattcgtagaaaaactcttcttattttgtttgtagtcaagaaagcaagtttccttt----tttgcagTTACTGGCCTTCATGACATGGATGAATTTGTACAATCCCAACTCTTACTTGCA

upper sequence: Vv08s0007g01960.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA13G31350.1 (Glycine max), 3'ss of exon 2
gttaggcaacatatattgttttcaacttcatggttta-tgcttctgtttctaccagcagtggtttgtttttc-ttaagttgatcagtttctgtgatgatttgcagTTACCGGGCTTCATGATATGGATGAATTTGTCCAGTCCCAACTTATTCTTGCG
   |     | | |  |  || ||  |  || ||  |    | ||      ||    | |  ||||||| |  | |||      ||||||  |     ||||||||||| || |||||||| |||||||| ||||| || |||||||| || ||||| 
-gaatttgtcttgttattattacatgtcaattgtaaaacattcctagaaaaactcttactattttgtttgtagtcaagaaagcaagtttccttt----tttgcagTTACTGGCCTTCATGACATGGATGAGTTTGTACAATCCCAACTCATACTTGCA

upper sequence: Vv08s0007g01960.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA13G31380.1 (Glycine max), 3'ss of exon 7
gttaggcaacatatattgttttcaacttcatggttta-tgcttctgtttctaccagcagtggtttgtttttc-ttaagttgatcagtttctgtgatgatttgcagTTACCGGGCTTCATGATATGGATGAATTTGTCCAGTCCCAACTTATTCTTGCG
   |     | | |  |  || ||  |  || ||  |    | ||      ||    | |  ||||||| |  | |||      ||||||  |     ||||||||||| || |||||||| |||||||| ||||| || |||||||| || ||| | 
-gaatttgtcttgttattattacatgtcaattgtaaaacattcctagaaaaactcttactattttgtttgtagtcaagaaagcaagtttccttt----tttgcagTTACTGGCCTTCATGACATGGATGAGTTTGTACAATCCCAACTCATACTTCCA

upper sequence: Vv08s0007g01960.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT5G01230.1 (Arabidopsis thaliana), 3'ss of exon 7
gttaggcaacatatattgttttcaacttcatggtttatgcttctgtttctaccagcagtggtttgtttttcttaagttgatcagtttctgtga--tgatttgcagTTACCGGGCTTCATGATATGGATGAATTTGTCCAGTCCCAACTTATTCTTGCG
                       ||     | | | | |  ||||| ||  |   || |   |   || |  ||     | |   || |   |  || ||||||||||| ||  | ||||| |||||||||||||||||||||||||| || || || 
---------------------gtaaaacagtagataaagtgtctgtctcgccgttcaatatatacgttatgctataaaaaacgccttttacaatttggtttgcagTTACTGGTTTGCATGACATGGATGAATTTGTCCAGTCCCAACTCATACTAGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctaccagcagtggtttgtttttcttaagttgatcagtttctgtgatgatttgcagTTACCGGGCTTCATGATATGGATGAATTTGTCCAGTCCCAACTTATTCTTGCG
                          agttgat  putative branch site (score: 5)
             tttgtttttcttaa  TA-rich tract