Sequence
atgc intronic sequence ATGC exonic sequencegtatgcaaattttctttctggcctcttaatttaaacatggaagcttaaaattttcagataggtgagctaataattgttagtttggttttccttgttagAATTTCTTCACAGAGCAGCTGATCTCACTCTGGTGCCATCAGCAGCCATTGCAAGGGATCTCCAAGCTGCTAGGGTAACAGCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g01940.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA18G42540.1 (Glycine max), 3'ss of exon 6
gtatgcaaattttctttctggcctcttaatttaaacatggaagcttaaaattttcagataggtgagctaataattgttagtttggttttccttgttagAATTTCTTCACAGAGCAGCTGATCTCACTCTGGTGCCATCAGCAGCCATTGCAAGGGATCTCCAAGCTGCTAGGGTAACAGCAG
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gtatgtacactttcttgcttactcctt----ccaatttgga--ctcaaatatt-------ggtgagc--ataacataaattttggtggtttatat-agAATTTCTTCACAGAGCAGCTGATCTGACTCTGGTGCCATCTGCTGCCATTGCGGGGGATCTCCTAGCAGCTAGAGTCACAGCAG
upper sequence: Vv08s0007g01940.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA07G17680.1 (Glycine max), 3'ss of exon 5
gtatgcaaattttctttctggcctcttaatttaaacatggaagcttaaaattttcagataggtgagc-taataattgttagtttggttttccttgttagAATTTCTTCACAGAGCAGCTGATCTCACTCTGGTGCCATCAGCAGCCATTGCAAGGGATCTCCAAGCTGCTAGGGTAACAGCAG
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gtatgtacactttcttgcttacacttt----tcaatttgga-----------ctcatattggtgaacataacaaattttggt--ggttat-------agAATTTCTTCACAGAGCAGCTGATCTGACTCTGGTGCCATCTGCTGCCATTGCGGGGGATCTCCTAGCAGCTAGAGTCACAGCAG
upper sequence: Vv08s0007g01940.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA01G27840.1 (Glycine max), 3'ss of exon 6
gtatgcaaattttctttctggcctcttaatttaaacatggaagcttaaaattttcagataggtgagctaataattgttagtttggttttccttgttagAATTTCTTCACAGAGCAGCTGATCTCACTCTGGTGCCATCAGCAGCCATTGCAAGGGATCTCCAAGCTGCTAGGGTAACAGCAG
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gtatgtatatgctctctt--gcttccttggttcaacttggaatctta---ttttt------gtgaaataaca----tgaatatgctgttttgtgt-agAATTTCTGCATAGAGCAGCTGATCTTACACTGGTGCCATCAGCTGCCATTGCAAAAGATCTTGAAGAAGCTAGAGTAACAGCAG
upper sequence: Vv08s0007g01940.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA03G14200.1 (Glycine max), 3'ss of exon 6
gtatgcaaattttctttctggcctcttaatttaaacatggaagcttaaaattttcagataggtgagctaataattgttagtttggttttccttgttagAATTTCTTCACAGAGCAGCTGATCTCACTCTGGTGCCATCAGCAGCCATTGCAAGGGATCTCCAAGCTGCTAGGGTAACAGCAG
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gtatgtatatgctctctttcttcctttg--ttcaacttggaatcata---ttttt------gtgaaataaca----tgaatatgctattttatgt-agAATTTCTGCATAGAGCAGCTGATCTTACATTGGTGCCATCAGCTGCCATTGCAAAAGATCTTGAAGAAGCTCGAGTAACAGCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttaaaattttcagataggtgagctaataattgttagtttggttttccttgttagAATTTCTTCACAGAGCAGCTGATCTCACTCTGGTGCCATCAGCAGCCATTGCAAGGGATCTCCAAGCTGCTAGGGTAACAGCAG
agctaat putative branch site (score: 3)
ttttccttgtt putative PPT
taataattgttagttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgcaaattttctttctggcctcttaatttaaacatggaagcttaaaattttcagataggtgagctaataattgttagtttggttttccttgttagAATTTCTTCACAGAGCAGCTGATCTCACTCTGGTGCCATCAGCAGCCATTGCAAGGGATCTCCAAGCTGCTAGGGTAACAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT