1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cggatctcagtttgttgcttgttctcttattgttttagttcatagacaattttagaaactacgtgctgtcttatttcctttttaatgaatccatatgcagGACACGTGTGACGCTCAAAAGAGATGGTGTAGTCCTAGATTTGGTGCCCCCTGCTACAAAAGTTAACAACCTCATATTTGGACGTACTTGGGTTGATTCA
species | Vitis vinifera |
transcript | Vv08s0007g00480.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGAAGACCAAATTTTTAGGAAACTCGCTTGACGTTTATCCTCTCGGAAG GACACGTGTGACGCTCAAAAGAGATGGTGTAGTCCTAGATTTGGTGCCCCCEST: gi|156735607|gb|EV239728.1|EV239728
genomic: TTGAAGACCAAATTTTTAGGAAACTCGCTTGACGTTTATCCTCTCGGAAGgtaaaacatt ... ccatatgcagGACACGTGTGACGCTCAAAAGAGATGGTGTAGTCCTAGATTTGGTGCCCCC
EST: TTGAAGACCAAATTTTTAGGAAACTCGCTTGACGTTTATCCTCTCGGAAG GACACGTGTGACGCTCNAAAGAGATGGTGTAGTCCTAGATTTGGTGCCCCCEST: gi|110716445|gb|EE091435.1|EE091435
genomic: TTGAAGACCAAATTTTTAGGAAACTCGCTTGACGTTTATCCTCTCGGAAGgtaaaacatt ... ccatatgcagGACACGTGTGACGCTCAAAAGAGATGGTGTAGTCCTAGATTTGGTGCCCCC
EST: ATTTTTAGGAAACTCGCTTGACGTTTATCCTCTCGGAAG GACACGTGTGACGCTCAAAAGAGATGGTGTAGTCCTAGATTTGGTGCCCCCEST: gi|110382321|gb|EC939158.1|EC939158
genomic: ATTTTTAGGAAACTCGCTTGACGTTTATCCTCTCGGAAGgtaaaacatt ... ccatatgcagGACACGTGTGACGCTCAAAAGAGATGGTGTAGTCCTAGATTTGGTGCCCCC
EST: TTGAAGACCAAATTTTTAGGAAACTCGCTTGACGTTTATCCTCTCGGAAG GACACGTGTGACGCTCAAAAGAGATGGTGTAGTCCTAGATTTGGTGCCCCC
genomic: TTGAAGACCAAATTTTTAGGAAACTCGCTTGACGTTTATCCTCTCGGAAGgtaaaacatt ... ccatatgcagGACACGTGTGACGCTCAAAAGAGATGGTGTAGTCCTAGATTTGGTGCCCCC
acaattttagaaactacgtgctgtcttatttcctttttaatgaatccatatgcagGACACGTGTGACGCTCAAAAGAGATGGTGTAGTCCTAGATTTGGTGCCCCCTGCTACAAAAGTTAACAACCTCATATTTGGACGTACTTGGGTTGATTCA
ttttaat putative branch site (score: 3)
ttatttcctttttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cggatctcagtttgttgcttgttctcttattgttttagttcatagacaattttagaaactacgtgctgtcttatttcctttttaatgaatccatatgcagGACACGTGTGACGCTCAAAAGAGATGGTGTAGTCCTAGATTTGGTGCCCCCTGCTACAAAAGTTAACAACCTCATATTTGGACGTACTTGGGTTGATTCA
- - - - - - - -tgcttgt
- - - - - - - - - - - - - - - - - - - - -atagacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - gaaacta