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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatgcacaatgttcagagtttgaggttatatacccatctctcaccctcctcttttgcttgtcaatggatacatcaagttgtagcaactattatatccttttttttatcagcagagttatctattagtcataacttgtgctggctgtattgaaacagGTTTCATTAGCATTTGGGCAAACTGGCTGACTTCTTGGGTTCACAATCTGGTTTCTGAAACTTGTGATTTCTCTTTTTTGTTGCTTGGGTCAAGTTTGGG

Basic information

species Vitis vinifera
transcript Vv08s0007g00120.t01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110406248|gb|EC971815.1|EC971815
EST:     TTCGTGGGAATTTTCATAGTTGTAGCAAGGGAGGTCTGCCTAGTCATCAG                         GTTTCATTAGCATTTGGGCAAACTGGCTGACTTCTTGGGTTCACAATCTGG
genomic: TTCGTGGGAATTTTCATAGTTGTAGCAAGGGAGGTCTGCCTAGTCATCAGgtgatgcaca ... attgaaacagGTTTCATTAGCATTTGGGCAAACTGGCTGACTTCTTGGGTTCACAATCTGG
EST: gi|30132527|gb|CB917866.1|CB917866
EST:     TTCGTGGGAATTTTCATAGTTGTAGCAAGGGAGGTCTGCCTAGTCATCAG                         GTTTCATTAGCATTTGGGCAAACTGGCTGACTTCTTGGGTTCACAATCTGG
genomic: TTCGTGGGAATTTTCATAGTTGTAGCAAGGGAGGTCTGCCTAGTCATCAGgtgatgcaca ... attgaaacagGTTTCATTAGCATTTGGGCAAACTGGCTGACTTCTTGGGTTCACAATCTGG
EST: gi|32456071|gb|CD797245.1|CD797245
EST:     TTCGTGGGAATTTTCATAGTTGTAGCAAGGGAGGTCTGCCTAGTCATCAG                         GTTTCATTAGCATTTGGGCAAACTGGCTGACTTCTTGGGTTCACAATCTGG
genomic: TTCGTGGGAATTTTCATAGTTGTAGCAAGGGAGGTCTGCCTAGTCATCAGgtgatgcaca ... attgaaacagGTTTCATTAGCATTTGGGCAAACTGGCTGACTTCTTGGGTTCACAATCTGG
EST: gi|110411536|gb|EC977255.1|EC977255
EST:     TTCGTGGGAATTTTCATAGTTGTAGCAAGGGAGGTCTGCCTAGTCATCAG                         GTTTCATTAGCATTTGGGCAAACTGGCTGACTTCTTGGGTTCACAATCTGG
genomic: TTCGTGGGAATTTTCATAGTTGTAGCAAGGGAGGTCTGCCTAGTCATCAGgtgatgcaca ... attgaaacagGTTTCATTAGCATTTGGGCAAACTGGCTGACTTCTTGGGTTCACAATCTGG
EST: gi|110369783|gb|EC933952.1|EC933952
EST:     TTCGTGGGAATTTTCATAGTTGTAGCAAGGGAGGTCTGCCTAGTCATCAG                         GTTTCATTAGCATTTGGGCAAACTGGCTGACTTCTTGGGTTCACAATCTGG
genomic: TTCGTGGGAATTTTCATAGTTGTAGCAAGGGAGGTCTGCCTAGTCATCAGgtgatgcaca ... attgaaacagGTTTCATTAGCATTTGGGCAAACTGGCTGACTTCTTGGGTTCACAATCTGG
EST: gi|110408770|gb|EC974411.1|EC974411
EST:     TTCGTGGGAATTTTCATAGTTGTAGCAAGGGAGGTCTGCCTAGTCATCAG                         GTTTCATTAGCATTTGGGCAAACTGGCTGACTTCTTGGGTTCACAATCTGG
genomic: TTCGTGGGAATTTTCATAGTTGTAGCAAGGGAGGTCTGCCTAGTCATCAGgtgatgcaca ... attgaaacagGTTTCATTAGCATTTGGGCAAACTGGCTGACTTCTTGGGTTCACAATCTGG
EST: gi|110361613|gb|EC925099.1|EC925099
EST:     TTCGTGGGAATTTTCATAGTTGTAGCAAGGGAGGTCTGCCTAGTCATCAG                         GTTTCATTAGCATTTGGGCAAACTGGCTGACTTCTTGGGTTCACAATCTGG
genomic: TTCGTGGGAATTTTCATAGTTGTAGCAAGGGAGGTCTGCCTAGTCATCAGgtgatgcaca ... attgaaacagGTTTCATTAGCATTTGGGCAAACTGGCTGACTTCTTGGGTTCACAATCTGG
EST: gi|110417546|gb|EC983611.1|EC983611
EST:     TTCGTGGGAATTTTCATAGTTGTAGCAAGGGAGGTCTGCCTAGTCATCAG                         GTTTCATTAGCATTTGGGCAAACTGGCTGACTTCTTGGGTTCACAATCTGG
genomic: TTCGTGGGAATTTTCATAGTTGTAGCAAGGGAGGTCTGCCTAGTCATCAGgtgatgcaca ... attgaaacagGTTTCATTAGCATTTGGGCAAACTGGCTGACTTCTTGGGTTCACAATCTGG
EST: gi|110403472|gb|EC969015.1|EC969015
EST:     TTCGTGGGAATTTTCATAGTTGTAGCAAGGGAGGTCTGCCTAGTCATCAG                         GTTTCATTAGCATTTGGGCAAACTGGCTGACTTCTTGGGTTCACAATCTGG
genomic: TTCGTGGGAATTTTCATAGTTGTAGCAAGGGAGGTCTGCCTAGTCATCAGgtgatgcaca ... attgaaacagGTTTCATTAGCATTTGGGCAAACTGGCTGACTTCTTGGGTTCACAATCTGG
EST: gi|110404984|gb|EC970511.1|EC970511
EST:     TTCGTGGGAATTTTCATAGTTGTAGCAAGGGAGGTCTGCCTAGTCATCAG                         GTTTCATTAGCATTTGGGCAAACTGGCTGACTTCTTGGGTTCACAATCTGG
genomic: TTCGTGGGAATTTTCATAGTTGTAGCAAGGGAGGTCTGCCTAGTCATCAGgtgatgcaca ... attgaaacagGTTTCATTAGCATTTGGGCAAACTGGCTGACTTCTTGGGTTCACAATCTGG
EST: gi|110375077|gb|EC940034.1|EC940034
EST:     TTCGTGGGAATTTTCATAGTTGTAGCAAGGGAGGTCTGCCTAGTCATCAG                         GTTTCATTAGCATTTGGGCAAACTGGCTGACTTCTTGGGTTCACAATCTGG
genomic: TTCGTGGGAATTTTCATAGTTGTAGCAAGGGAGGTCTGCCTAGTCATCAGgtgatgcaca ... attgaaacagGTTTCATTAGCATTTGGGCAAACTGGCTGACTTCTTGGGTTCACAATCTGG
EST: gi|110409487|gb|EC975150.1|EC975150
EST:     TTCGTGGGAATTTTCATAGTTGTAGCAAGGGAGGTCTGCCTAGTCATCAG                         GTTTCATTAGCATTTGGGCAAACTGGCTGACTTCTTGGGTTCACAATCTGG
genomic: TTCGTGGGAATTTTCATAGTTGTAGCAAGGGAGGTCTGCCTAGTCATCAGgtgatgcaca ... attgaaacagGTTTCATTAGCATTTGGGCAAACTGGCTGACTTCTTGGGTTCACAATCTGG
EST: gi|110398671|gb|EC965142.1|EC965142
EST:     TTCGTGGGAATTTTCATAGTTGTAGCAAGGGAGGTCTGCCTAGTCATCAG                         GTTTCATTAGCATTTGGGCAAACTGGCTGACTTCTTGGGTTCACAATCTGG
genomic: TTCGTGGGAATTTTCATAGTTGTAGCAAGGGAGGTCTGCCTAGTCATCAGgtgatgcaca ... attgaaacagGTTTCATTAGCATTTGGGCAAACTGGCTGACTTCTTGGGTTCACAATCTGG
EST: gi|110411501|gb|EC977218.1|EC977218
EST:     TTCGTGGGAATTTTCATAGTTGTAGCAAGGGAGGTCTGCCTAGTCATCAG                         GTTTCATTAGCATTTGGGCAAACTGGCTGACTTCTTGGGTTCACAATCTGG
genomic: TTCGTGGGAATTTTCATAGTTGTAGCAAGGGAGGTCTGCCTAGTCATCAGgtgatgcaca ... attgaaacagGTTTCATTAGCATTTGGGCAAACTGGCTGACTTCTTGGGTTCACAATCTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttatcagcagagttatctattagtcataacttgtgctggctgtattgaaacagGTTTCATTAGCATTTGGGCAAACTGGCTGACTTCTTGGGTTCACAATCTGGTTTCTGAAACTTGTGATTTCTCTTTTTTGTTGCTTGGGTCAAGTTTGGG
                         tcataac  putative branch site (score: 2)
              ttatctatta  TA-rich tract