1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttataaaccaaaaaatgttctttcctcttctatgtatactcatctgttgctttccacatttgtgttagcttttctgtttatcaagtttaattttttgcagGAAGACTACTTTTACCTTCCCTAGATTTCTGGCGCAACCAAAAGGCAGTTTATGATGCG
species | Vitis vinifera |
transcript | Vv08s0007g00050.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGAGTTTGAAACGATCCAGATCAG GAAGACTACTTTTACCTTCCCTAGATTTCTGGCGCAACCAAAAGGCAGTTTEST: gi|110362850|gb|EC926407.1|EC926407
genomic: TGAGTTTGAAACGATCCAGATCAGgtaaatttgt ... ttttttgcagGAAGACTACTTTTACCTTCCCTAGATTTCTGGCGCAACCAAAAGGCAGTTT
EST: GAAACGATCCAGATCAG GAAGACTACTTTTACCTTCCCTAGATTTCTGGCGCAACCAAAAGGCAGTTT
genomic: GAAACGATCCAGATCAGgtaaatttgt ... ttttttgcagGAAGACTACTTTTACCTTCCCTAGATTTCTGGCGCAACCAAAAGGCAGTTT
gttgctttccacatttgtgttagcttttctgtttatcaagtttaattttttgcagGAAGACTACTTTTACCTTCCCTAGATTTCTGGCGCAACCAAAAGGCAGTTTATGATGCG
gtttaat putative branch site (score: 4)
ttttttgc CT-rich tract
ttttctgtttatcaag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttataaaccaaaaaatgttctttcctcttctatgtatactcatctgttgctttccacatttgtgttagcttttctgtttatcaagtttaattttttgcagGAAGACTACTTTTACCTTCCCTAGATTTCTGGCGCAACCAAAAGGCAGTTTATGATGCG
- ataaacc
- - - - -aaaaaat
- - - - - - - - - - - -cctcttc
- - - - - - - - - - - - - - - - - - -actcatc
- - - - - - - - - - - - - - - - - - - - - - tgttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - -ccacatt