Sequence
atgc intronic sequence ATGC exonic sequencegtatttattctttagtccagaatttattatggcaaaaatatctagggcttactcttgctgtgactatattgccattggtatgttgtttataaaatgtgcataatgtgtctgaggagagtttctggttaaccaacagGGAATACTGATGATGAAAATGATGACAAAACAATCTATTCTATTGGAACAAGGTTGAAAGCGTTCTCCGATTGGCTTCTCAAAACTATGGTGGCAGGTAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0255g00100.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA16G25990.1 (Glycine max), 3'ss of exon 8
gtatttattctttagtccagaatttattatggcaaaaatatctagggcttactcttgctgtgactatattgccattggtatgttgtttataaaatgtgcataatgtgtctgaggagagt-ttctggttaaccaacagGGAATACTGATGATGAAAATGATGACAAAACAATCTATTCTATTGGAACAAGGTTGAAAGCGTTCTCCGATTGGCTTCTCAAAACTATGGTGGCAGGTAA----------
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-----------------------------------agataactacaaattcctgtataggagacaa-atagat-ttcacatttagcttgtccatt-tgaactaaacattgactggtatcattatggtt------caggaa---ccagTCCAAAACTTGGTGACAAGACAATTTATTCCATTGGCACAAGACTGAAAGCATTCTCTGATTGGCTTCTGAAAACTATGGTTTCCGGCAAACTTGATGCT
upper sequence: Vv07s0255g00100.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA02G06910.1 (Glycine max), 3'ss of exon 9
gtatttattctttagtccagaatttat-tatggcaaaaatatctag--ggcttactcttgctgtgactatattgccattggtatgttgtttataaaatgtgcataatgtgtctgaggagagtttctggttaaccaaca-------gG---GAATACTGATGATGAAAATGATGACAAAACAATCTATTCTATTGGAACAAGGTTGAAAGCGTTCTCCGATTGGCTTCTCAAAACTATGGTGGCAGGTAA---
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gtcattcttctgtgcttgacactacaggtatgagttctgttttctgccgcctttccactcttccctccaaattcctgtataggtgacaattagatttcacatttagcttgtcc-atttgaactaaagattgaccagtatcattatggttcagGAACCAGTCCAAAACTTGGCGACAAGACAATTTATTCCATTGGCACAAGACTGAAAGCATTCTCTGATTGGCTTCTGAAAACTATGGTTTCGGGCAAGCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttgtttataaaatgtgcataatgtgtctgaggagagtttctggttaaccaacagGGAATACTGATGATGAAAATGATGACAAAACAATCTATTCTATTGGAACAAGGTTGAAAGCGTTCTCCGATTGGCTTCTCAAAACTATGGTGGCAGGTAA
ggttaac putative branch site (score: 3)
ttataaaatgt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatttattctttagtccagaatttattatggcaaaaatatctagggcttactcttgctgtgactatattgccattggtatgttgtttataaaatgtgcataatgtgtctgaggagagtttctggttaaccaacagGGAATACTGATGATGAAAATGATGACAAAACAATCTATTCTATTGGAACAAGGTTGAAAGCGTTCTCCGATTGGCTTCTCAAAACTATGGTGGCAGGTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG