1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgctatgtaagcatgtggtaaagataatggggaaaatagtattgctagctttatatttataggttttgaaaaatttcttggaaataattgttgcttttagGGGTTCAAGTTCCAGGAATGGCTGGATATGCGTCAAAAAGGAAGGACCGTGGAGACAAAAGACTCTGGAGATAGTGACGGTAGGTATCGAATTGATTGTC
species | Vitis vinifera |
transcript | Vv07s0191g00060.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
tagctttatatttataggttttgaaaaatttcttggaaataattgttgcttttagGGGTTCAAGTTCCAGGAATGGCTGGATATGCGTCAAAAAGGAAGGACCGTGGAGACAAAAGACTCTGGAGATAGTGACGGTAGGTATCGAATTGATTGTC
ttgctttt CT-rich tract
ttatatttataggttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgctatgtaagcatgtggtaaagataatggggaaaatagtattgctagctttatatttataggttttgaaaaatttcttggaaataattgttgcttttagGGGTTCAAGTTCCAGGAATGGCTGGATATGCGTCAAAAAGGAAGGACCGTGGAGACAAAAGACTCTGGAGATAGTGACGGTAGGTATCGAATTGATTGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- ctatgta
- - - - - -catgtgg
- - - - - - - - - - aagataa
- - - - - - - - - - - - - - - ggaaaat
- - - - - - - - - - - - - - - - - - - - -ttgctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaata