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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtaataataaaaaaattaaaaattaaaatttcaggatttgcttcatgggcttttgtttgttttaagatgcagaatatggaataggaattttatccactttgctttacagGTTCGTTTGTGGGATATTACCTCTGGATCTCTCCTTGATACGTGTGAAGTTGGATCACAG

Basic information

species Vitis vinifera
transcript Vv07s0151g00790.t01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349827480|gb|FQ422348.1|FQ422348
EST:     CTCCTGATTACCCAGAGGGATTTCTTGTTTCTGGGAGTGGTGATTCAACA                         GTTCGTTTGTGGGATATTACCTCTGGATCTCTCCCTGATACGTGTG
genomic: CTCCTGATTACCCAGAGGGATTTCTTGTTTCTGGGAGTGGTGATTCAACAgtgagtaata ... tgctttacagGTTCGTTTGTGGGATATTACCTCTGGATCTCTCCTTGATACGTGTG
EST: gi|349826552|gb|FQ418643.1|FQ418643
EST:     CTCCTGATTACCCAGAGGGATTTCTTGTTTCTGGGAGTGGTGATTCAACA                         GTTCGTTTGTGGGATATTACCTCTGGATCTCTCCTTGATACGTGTGAAGTT
genomic: CTCCTGATTACCCAGAGGGATTTCTTGTTTCTGGGAGTGGTGATTCAACAgtgagtaata ... tgctttacagGTTCGTTTGTGGGATATTACCTCTGGATCTCTCCTTGATACGTGTGAAGTT
EST: gi|122690606|gb|EC954888.1|EC954888
EST:     CTCCTGATTACCCAGAGGGATTTCTTGTTTCTGGGAGTGGTGATTCAACA                         GTTCGTTTGTGGGACATTACCTCTGGATCTCTCCTTGATACGTGT
genomic: CTCCTGATTACCCAGAGGGATTTCTTGTTTCTGGGAGTGGTGATTCAACAgtgagtaata ... tgctttacagGTTCGTTTGTGGGATATTACCTCTGGATCTCTCCTTGATACGTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttgttttaagatgcagaatatggaataggaattttatccactttgctttacagGTTCGTTTGTGGGATATTACCTCTGGATCTCTCCTTGATACGTGTGAAGTTGGATCACAG
                                          ctttgcttt  CT-rich tract
                         aataggaattttat  TA-rich tract